Locus 4993

Sequence ID 2R_DroMel_CAF1
Location 16,265,046 – 16,265,143
Length 97
Max. P 0.527348
window7997

overview

Window 7

Location 16,265,046 – 16,265,143
Length 97
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 82.65
Mean single sequence MFE -23.72
Consensus MFE -11.10
Energy contribution -12.16
Covariance contribution 1.06
Combinations/Pair 1.21
Mean z-score -2.97
Structure conservation index 0.47
SVM decision value -0.01
SVM RNA-class probability 0.527348
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16265046 97 - 20766785
CCUGGUUUAUAUAUGUAUGUAUAUUUGUUAGCUGCACUGCUGUGACAUACAAUUGUAC-------AUAAUGUAUUUGCUAGGGU-UUCAUUAUUGUUUU-UU--GUUU
((((((..((((((.((((((((.((((....(((((....))).)).)))).)))))-------)))))))))..))))))..-..............-..--.... ( -27.00)
>DroSec_CAF1 40208 98 - 1
CCUGGUUUAUAUAUGUAUGUAUAUUUGUUAGCUGCACUGCCGGGACAUACAAUUGUAC-------AUAAUGUAUUUGCUAGAGU-UUCGUUAUUGUUUUUUU--UGUU
.(((((..((((((.((((((((.((((...(((......))).....)))).)))))-------)))))))))..)))))...-.................--.... ( -20.90)
>DroSim_CAF1 40703 97 - 1
CCUGGUUUAUAUAUGUAUGUAUAUUUGUUAGCUGCACUGCCGUGACAUACAAUUGUAC-------AUAAUGUAUUUGCUAGGGU-UUCGUUAUUGUUUU-UU--UGUU
((((((..((((((.((((((((.((((....(((((....))).)).)))).)))))-------)))))))))..))))))..-..............-..--.... ( -26.40)
>DroEre_CAF1 45476 97 - 1
CCUGGCUUAUAUAUGUAUGUAUACUUGUUAGCUGCACUGCUGUGACAUACAAUUGUAC-------AUAACGUAUUUGCUAGGGU-UUCGUUAUUGUUUUAAUGAU---
((((((....(((((((((((((.((((....(((((....))).)).)))).)))))-------)).))))))..))))))..-.((((((......)))))).--- ( -30.20)
>DroYak_CAF1 53595 100 - 1
CCUGGCUUAUAUAUGUAUGUAUAUUUGUUAGCUGCACUGCUGUGACAUACAAUUGUAC-------AUAAUGUUUUUGCUAGGGU-UUCGUUAUUGUUUUUAUUAUGUU
((((((....((((.((((((((.((((....(((((....))).)).)))).)))))-------)))))))....))))))..-....................... ( -25.00)
>DroAna_CAF1 19231 100 - 1
CCUGGUUUAUAUAUGAAU--ACACUUUUAGGCGGCUAUUCUGUGACAUUCACUCAUACGUAUUACGUAUUGUAUUCGAUAAAGUUUUCGUUAUUGUUUU-UU--C---
.............(((((--(((..................(((.....)))..(((((.....)))))))))))))......................-..--.--- ( -12.80)
>consensus
CCUGGUUUAUAUAUGUAUGUAUAUUUGUUAGCUGCACUGCUGUGACAUACAAUUGUAC_______AUAAUGUAUUUGCUAGGGU_UUCGUUAUUGUUUU_UU__UGUU
((((((..((((((((((((.(((.....(((......)))))))))))))..................)))))..)))))).......................... (-11.10 = -12.16 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:02 2006