Locus 4990

Sequence ID 2R_DroMel_CAF1
Location 16,253,755 – 16,253,850
Length 95
Max. P 0.765132
window7989

overview

Window 9

Location 16,253,755 – 16,253,850
Length 95
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 80.85
Mean single sequence MFE -26.30
Consensus MFE -14.13
Energy contribution -13.55
Covariance contribution -0.58
Combinations/Pair 1.17
Mean z-score -2.45
Structure conservation index 0.54
SVM decision value 0.51
SVM RNA-class probability 0.765132
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16253755 95 - 20766785
GGAAUCCUUCUGCU------UCACUCGUUUGCGGAGCC-AAGCUGUAAAAAUUUAUUACCCUUCGCCAGUGUUGAUGCAUGUUUGCACACAUGUAACAACAU
........(((((.------..........)))))((.-(((..((((.......)))).))).))..((((((.(((((((......))))))).)))))) ( -21.20)
>DroPse_CAF1 46720 95 - 1
GGUAUCCUUACUC-----UCAAUGCUGCCUGCUGU-AA-GGGCUGUAAAAAUUUAUUACCCUUCAGCAAUGUUGAUGCAUGUUUGUACACAUGUAACAACAU
((((.(.((....-----..)).).))))(((((.-((-(((..((((....))))..))))))))))((((((.(((((((......))))))).)))))) ( -30.00)
>DroEre_CAF1 38992 94 - 1
GGAAUCCUUCUGC-------UCUCUCGUUUGCGGAGCA-GAGCUGUAAAAAUUUAUUACCCUUCGCCUGUGUUGAUGCAUGUUUGCACACAUGUAGCAACUU
((.....((((((-------((((......).))))))-)))..((((.......)))))).........((((.(((((((......))))))).)))).. ( -23.50)
>DroYak_CAF1 46981 101 - 1
GGAAUCCUUCUGCUGCUCUCUCUCUCGUUUGCGGAGCA-GAGCUGUAAAAAUUUAUUACCCUUUGCCUGUGUUGAUGCAUGUUUGCACACAUGUAACAACAU
..........(((.(((((..(((.((....))))).)-)))).))).....................((((((.(((((((......))))))).)))))) ( -26.50)
>DroAna_CAF1 12460 90 - 1
GGUAUCCUUAUGC-----------UCGU-UGUGGGGCUGGGGCUGUAAAAAUUUAUUACCCUUCGCCUGUGUUGAUGCAUGUUUGCACACAUGUAACAACAU
(((((....))))-----------)...-....((((.((((..((((....))))..))))..))))((((((.(((((((......))))))).)))))) ( -26.60)
>DroPer_CAF1 46653 95 - 1
GGUAUCCUUACUC-----UCAAUGCUGCCUGCUGU-AA-GGGCUGUAAAAAUUUAUUACCCUUCAGCAAUGUUGAUGCAUGUUUGUACACAUGUAACAACAU
((((.(.((....-----..)).).))))(((((.-((-(((..((((....))))..))))))))))((((((.(((((((......))))))).)))))) ( -30.00)
>consensus
GGAAUCCUUAUGC_______UCUCUCGUUUGCGGAGCA_GAGCUGUAAAAAUUUAUUACCCUUCGCCAGUGUUGAUGCAUGUUUGCACACAUGUAACAACAU
((........................((((.........)))).((((.......)))))).......((((((.(((((((......))))))).)))))) (-14.13 = -13.55 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:54 2006