Locus 499

Sequence ID 2R_DroMel_CAF1
Location 2,736,976 – 2,737,081
Length 105
Max. P 0.987521
window949

overview

Window 9

Location 2,736,976 – 2,737,081
Length 105
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 71.01
Mean single sequence MFE -28.88
Consensus MFE -12.77
Energy contribution -12.97
Covariance contribution 0.20
Combinations/Pair 1.24
Mean z-score -2.41
Structure conservation index 0.44
SVM decision value 2.08
SVM RNA-class probability 0.987521
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2736976 105 - 20766785
C--AGUUUUC-GUUCAUGAUAAAAAUGAGCGUCGGAAAUGCGAAUAUAAAUUCAGCCAUAUCUGAUGUACAAGUGUACAUCUG----ACCGGGAC--ACUAGGAAUGGGAUUGG
(--((.(..(-((((..........((.((((((((.((((((((....)))).).))).)))))))).))(((((...((..----...)).))--)))..)))))..)))). ( -27.00)
>DroSec_CAF1 21107 105 - 1
C--AGUUUUG-GUUCAUGAUAAAAAUGAGCGUCGGAAAUGCGAAUAUAAAUUCAGCCAUAUCUGAUGUACAAGUGUACAUCUG----ACCGGGGG--ACUGGGAAUGGGUUUGG
.--.......-((((((.......)))))).(((......)))...((((((((..(...((.(((((((....))))))).)----)((((...--.)))))..)))))))). ( -30.80)
>DroSim_CAF1 8080 105 - 1
N--NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAUUCAGCCAUAUCUGAUGUACAAGUGUACAUCUG----ACCGGGGG--ACUGGGUAUGGGAUUGG
.--.......-............................................((((((..(((((((....)))))))..----.((((...--.))))))))))...... ( -23.20)
>DroEre_CAF1 12375 92 - 1
C--AGUUUUC-GUUCAUGAUAAAAAUGAGCGUCGGAAAUGCGAAUAUAAAUUCAGCCAUAUCUGAUGUACAAGUGUACAUCUG----ACCGGGGG--ACUG-------------
(--((((..(-((((((.......))))))..(((....((((((....)))).))....((.(((((((....))))))).)----)))))..)--))))------------- ( -30.50)
>DroWil_CAF1 5258 112 - 1
CGGGCUUUUCGGUUCAUGAUAAAAAUGAGCGUCGGAAAUGCGAAUAUAAAUUUUGCCAUAUCUGAUGUACAACUGUUCAUAUACAUGUUUGUGUGUGUGUGAGAGUUUGUUU--
(((((((..((((((((.......))))((((((((.(((((((.......)))).))).))))))))...)))).((((((((((......)))))))))))))))))...-- ( -32.30)
>DroYak_CAF1 21853 105 - 1
C--AGUUUUC-GUUCAUGAUAAAAAUGAGCGUCGGAAAUGCGAAUAUAAAUUCAGCCAUAUCUGAUGUACAAGUGUACAUCUG----ACCGGGGG--AUUGGGAUUGGGAAUGG
(--((((..(-((((((.......))))))..(((....((((((....)))).))....((.(((((((....))))))).)----)))))..)--))))............. ( -29.50)
>consensus
C__AGUUUUC_GUUCAUGAUAAAAAUGAGCGUCGGAAAUGCGAAUAUAAAUUCAGCCAUAUCUGAUGUACAAGUGUACAUCUG____ACCGGGGG__ACUGGGAAUGGGAUUGG
...........((((((.......)))))).................................(((((((....))))))).......((((......))))............ (-12.77 = -12.97 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:15 2006