Locus 4989

Sequence ID 2R_DroMel_CAF1
Location 16,253,396 – 16,253,486
Length 90
Max. P 0.992436
window7988

overview

Window 8

Location 16,253,396 – 16,253,486
Length 90
Sequences 4
Columns 90
Reading direction forward
Mean pairwise identity 64.24
Mean single sequence MFE -21.93
Consensus MFE -14.65
Energy contribution -13.16
Covariance contribution -1.50
Combinations/Pair 1.56
Mean z-score -1.73
Structure conservation index 0.67
SVM decision value 2.33
SVM RNA-class probability 0.992436
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16253396 90 + 20766785
AUUCGGGACUUGGUCGGUUGGUGAGCAAUGAUGAUGUUUUGGCAUUCUCAUUUCAUCGUUUUUAUUUUCCUUUCGGUGGAAUGAGGACAG
..(((((((.(.((((.(((.....))))))).).)))))))..((((((((((((((...............))))))))))))))... ( -24.96)
>DroSec_CAF1 33474 82 + 1
UUUCGGGACUUGGUU----GGUGGACAAUGAUGAUGUUUUGGCAUUCUCAUUUCGCCGUUUUUAUUUUCCUUUCGGUGGAAUGAGG----
..(((((((.(.(((----(.....)))).)....)))))))....((((((((((((...............)))))))))))).---- ( -23.56)
>DroEre_CAF1 38692 72 + 1
AUUUGGGACUUCG--------UAGGCAAUGAUGAUGUUUUGGCAUUUUCAUUUCGCCG----------UUUUUUUGUGGAAUGAGGGUUC
..(..((((.(((--------(........)))).))))..).(((((((((((((..----------.......))))))))))))).. ( -16.70)
>DroAna_CAF1 12103 72 + 1
AUCCUGGACUCGGG--ACU-AGGAGCCACGAUGAUGUUUUGGCAUUUUCAUUUCGGCCAUU-------------GUUGGGAUGGGACC--
.((((((.......--.))-))))((((.(((...))).))))..(..(((..((((....-------------))))..)))..)..-- ( -22.50)
>consensus
AUUCGGGACUUGGU______GUGAGCAAUGAUGAUGUUUUGGCAUUCUCAUUUCGCCGUUU_______CCUUUCGGUGGAAUGAGG_C__
..((..(((..........................)))..))...(((((((((((((...............))))))))))))).... (-14.65 = -13.16 +  -1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:53 2006