| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,247,281 – 16,247,378 |
| Length | 97 |
| Max. P | 0.950963 |
| Location | 16,247,281 – 16,247,378 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 74.25 |
| Mean single sequence MFE | -16.44 |
| Consensus MFE | -8.96 |
| Energy contribution | -10.04 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.950963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16247281 97 + 20766785 UAAAUAAUAUAAAACUAUGCUUGUGGUAUUUAUUUAAACCUAAAGACAUUACGAAAAUUAUACCACCAGCA--AAGUUU--CAGAACU-------CACGGGACUGCUC----------- ...........(((((.((((.(((((((..((((...................)))).))))))).))))--.)))))--(((..(.-------....)..)))...----------- ( -17.91) >DroVir_CAF1 74508 116 + 1 UAAAUAAUAUAAAACUAUGCUUGUGGUAUUUAUUUAAACCUAAAGACAUUACGAAAAUUAUACCCCGAGCACAAACUUU---ACCAGUCGACAGUCACGCCCCUCCCCUACCCUACCCA .................((((((.(((((..((((...................)))).))))).))))))........---..................................... ( -11.51) >DroWil_CAF1 65240 86 + 1 UAAAUAAUAUAAAACUAUGCUUGUGGUAUUUAUUUAAACCUAAAGACAUUACCUAAAUUAUACCCAAAGCA--CAGUGC--AAAAACU-------UU---------------------- .............(((.(((((..(((((..(((((.................))))).)))))..)))))--.)))..--.......-------..---------------------- ( -12.43) >DroMoj_CAF1 87067 117 + 1 UAAAUAAUAUAAAACUAUGCUUGUGGUAUUUAUUUAAACCUAAAGACAUUACGAAAAUUAUACCCCAAGCACAAAGUUUU-CACCAGUAG-CUGCCCAGUCCUUCCGCAGCUGCCCCCA ..........((((((.((((((.(((((..((((...................)))).))))).))))))...))))))-.....((((-((((...........))))))))..... ( -26.11) >DroAna_CAF1 4935 96 + 1 UAAAUAAUAUAAAACUAUGCUUGUAGUAUUUAUUUAAACCUAAAGACACUACGAAAAUUAUACCCUGAGCA--AAGUUCUCUACCACU-------CACGGGACUU-------------- ....................(((((((.((((........))))...)))))))........(((((((..--.((....))....))-------)).)))....-------------- ( -13.40) >DroPer_CAF1 40087 96 + 1 UAAAUAAUAUAAAACUAUGCUUGUGGUAUUUAUUUAAACCUAAAGACAUUACGGAAAUUAUACCCAAAGCA--AAGUUUCCCUCCACU-------CACGGGAAUU-------------- ............((((.(((((..(((((..((((...(((((.....))).)))))).)))))..)))))--.))))((((......-------...))))...-------------- ( -17.30) >consensus UAAAUAAUAUAAAACUAUGCUUGUGGUAUUUAUUUAAACCUAAAGACAUUACGAAAAUUAUACCCCAAGCA__AAGUUU__CACCACU_______CACGGGACUC______________ ...........(((((.((((((.(((((..((((...................)))).))))).))))))...)))))........................................ ( -8.96 = -10.04 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:52 2006