Locus 4986

Sequence ID 2R_DroMel_CAF1
Location 16,241,928 – 16,242,021
Length 93
Max. P 0.544582
window7984

overview

Window 4

Location 16,241,928 – 16,242,021
Length 93
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 81.25
Mean single sequence MFE -31.91
Consensus MFE -20.49
Energy contribution -21.80
Covariance contribution 1.31
Combinations/Pair 1.16
Mean z-score -1.52
Structure conservation index 0.64
SVM decision value 0.02
SVM RNA-class probability 0.544582
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16241928 93 + 20766785
GGAGUGCCU-GGCCUAAUAUGUCAACAUCAGUGGCACAUUAGGUGGGCGGCCAG--UUUGCAU--CUCUUAGGCAGGAUUAGCCCUUUUUUUGGCCAG------
.....((((-(.((((((.(((((.......))))).)))))))))))((((((--..(((..--.......)))((......)).....))))))..------ ( -30.70)
>DroPse_CAF1 35180 89 + 1
ACGAUGCCAGGGCCUAAUAUGUCAACAUG--------GUUAGGUGGGCGUCCGG--CUCGUCCCCUGUUUAGCCCGGCUUAGCUCC-----UGGCCAGGCCAUC
..((((.((((((((((((((....))).--------)))))))(((((.....--..)))))))))....(((.((((.......-----.)))).))))))) ( -33.60)
>DroSec_CAF1 22117 92 + 1
GGAGUGCCU-GGCCUAAUAUGUCAACAUCACUGGCACAUUAGGUGGGAGUCCAG--CUCGCAU--CUCUUAGCCAGGAUUAGCCCUUU-UUUGGCCAG------
.......((-((((............(((.(((((.....(((((.(((.....--))).)))--))....)))))))).........-...))))))------ ( -31.25)
>DroSim_CAF1 22388 92 + 1
GGAGUGCCU-GGCCUAAUAUGUCAACAUCACUGGCACAUUAGGUGGGCGGCCAG--CUCGCAU--CUCUUAGCCAGGAUUAGCCCUUU-UUUGGCCAG------
((.((.(((-((((((((.(((((.......))))).)))))((((((.....)--)))))..--......))))))....))))...-.........------ ( -32.60)
>DroEre_CAF1 27150 92 + 1
GGAGUGCCU-GGCCUAAUAUGUCAACUUCAAUGGCACAUUACGUGGGCGGCCAG--CUCGCAU--CUCUUAGCCAGGAUUAGCCCUUU-UUUGGCCAG------
((.((.(((-(((.((((.(((((.......))))).)))).((((((.....)--)))))..--......))))))....))))...-.........------ ( -29.10)
>DroYak_CAF1 34968 91 + 1
GGAGUGCCU-GGCCUAAUAUGUCAACAUCACUGGCACAUUAGGUGGGCGGCCAGCGCUCGCAU--CUCUUAGCCAGGAUUAGCCCUUU-UUUGGC---------
((.((.(((-((((((((.(((((.......))))).)))))(((((((.....)))))))..--......))))))....))))...-......--------- ( -34.20)
>consensus
GGAGUGCCU_GGCCUAAUAUGUCAACAUCACUGGCACAUUAGGUGGGCGGCCAG__CUCGCAU__CUCUUAGCCAGGAUUAGCCCUUU_UUUGGCCAG______
.....((((..(((((((.(((((.......))))).)))))))))))((((((............(((......)))............))))))........ (-20.49 = -21.80 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:50 2006