Locus 4984

Sequence ID	2R_DroMel_CAF1
Location	16,241,157 – 16,241,272
Length	115
Max. P	0.560942

overview

Window 0

Location	16,241,157 – 16,241,272
Length	115
Sequences	4
Columns	115
Reading direction	forward
Mean pairwise identity	78.95
Mean single sequence MFE	-14.82
Consensus MFE	-7.01
Energy contribution	-8.39
Covariance contribution	1.38
Combinations/Pair	1.17
Mean z-score	-2.44
Structure conservation index	0.47
SVM decision value	0.05
SVM RNA-class probability	0.560942
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16241157 115 + 20766785
CAUUUAAAACACAUGUACAUUUUGGCUAAAUCAACAAGCCAAACCAAACAAGUCAACCAAGUAAUCAUACAAAGAAAAUAAAGUGACAAUUAUAUGUUAUUAAAAUAUUACCAAA
..(((((...(((((((...(((((((.........)))))))........((((.........((.......))........))))...)))))))..)))))........... ( -15.33)
>DroSec_CAF1 21347 112 + 1
CAU--GGUACACAUGUACAUU-UGGCUAAAUCAACAAGCCAAACCAAACAAGUCAACCAAGUAAUCAUACAAUGAAAAUAAAGUGACAAUUACAUGUUAUUAAAAUAUUAUCAAA
..(--((((.(((((((..((-(((((.........)))))))........((((.........((((...))))........))))...))))))))))))............. ( -19.73)
>DroSim_CAF1 21617 113 + 1
CAU--GGUACACAUGUACAUUUUGGCUAAAUCAACAAGCCAAACCAAACAAGUCAACCAAGUAAUCAUGCAAUGAAAAUAAAGUGACAAUUAUAUGUUAUUAAAAUAUUACCCAA
..(--(((..((.(((....(((((((.........)))))))....))).))..)))).((((((((...))))......(((((((......)))))))......)))).... ( -18.50)
>DroEre_CAF1 26465 99 + 1
--------------UUUAAUUUUUGCUAAACUAACAAGCCCAGCCAAACAAGUCAACCCAUUAAUGAUACCAAGCAAUUACACUGGCCAUUACAA--UUUAAAAAUAUUUCACAA
--------------....(((((((((.........)))...((((.....((((.........))))...((....))....))))........--...))))))......... (  -5.70)
>consensus
CAU__GGUACACAUGUACAUUUUGGCUAAAUCAACAAGCCAAACCAAACAAGUCAACCAAGUAAUCAUACAAAGAAAAUAAAGUGACAAUUACAUGUUAUUAAAAUAUUACCAAA
..........(((((((...(((((((.........)))))))........((((............................))))...))))))).................. ( -7.01 =  -8.39 +   1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:46 2006