| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,240,347 – 16,240,439 |
| Length | 92 |
| Max. P | 0.746729 |
| Location | 16,240,347 – 16,240,439 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 73.37 |
| Mean single sequence MFE | -22.23 |
| Consensus MFE | -8.30 |
| Energy contribution | -9.05 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.77 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.746729 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16240347 92 + 20766785 UAGAAAUUUCUUUAAGCUAUGACAUUGAUUAAAUUUAAAAGCUGAUCAAUGCUCUUAGCUUCAGUG-GGAAUUCCCAAAGGACUUUUCUCGCC .(((((..(((((((((((.(((((((((((...........))))))))).)).))))))...((-((....)))))))))..))))).... ( -27.50) >DroSec_CAF1 20596 82 + 1 CAGAAUUUUCUUUU---------CUUGAUUAAAUUUGAGAGCUGAUCAAUGC--UUAGCUUUAGCGGGGAAUUCCCAUAGGACAUUUCUCGCC .((((.......))---------))............((((((((.......--)))))))).((((((((((((....))).))))))))). ( -20.70) >DroSim_CAF1 20874 81 + 1 CAGAAUUUUCUUUU---------CUUGAUUAAAUUUGAGAGCUGAUCGAUGC--UUAGCUUCAGUG-GGAAUUCCCAUAGGAAUUUUCUCGCC .((((..(((((.(---------((..(......)..)))(((((.......--)))))....(((-((....))))))))))..)))).... ( -19.80) >DroYak_CAF1 33477 72 + 1 C-GAAU-----------------AUUUCUUGAACAAGGAAGCCGAUCGAAGC--UUAGCUUUAGUU-GGCAUUCCCAAAGGACUUUUCUUGCC .-(((.-----------------..(((((......((((((((((..((((--...))))..)))-))).))))..)))))...)))..... ( -20.90) >consensus CAGAAUUUUCUUUU_________AUUGAUUAAAUUUGAAAGCUGAUCAAUGC__UUAGCUUCAGUG_GGAAUUCCCAAAGGACUUUUCUCGCC .....................................((((((((.........)))))))).(((.((((.(((....)))...))))))). ( -8.30 = -9.05 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:45 2006