Locus 498

Sequence ID 2R_DroMel_CAF1
Location 2,736,833 – 2,736,936
Length 103
Max. P 0.676779
window948

overview

Window 8

Location 2,736,833 – 2,736,936
Length 103
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 86.99
Mean single sequence MFE -31.22
Consensus MFE -22.55
Energy contribution -22.31
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -1.84
Structure conservation index 0.72
SVM decision value 0.30
SVM RNA-class probability 0.676779
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2736833 103 + 20766785
CUGGCGGGCAUCCUGCCACCGCCACCGGCUCCG------------GA-CU-GCAAAUGCAGUGCAGCCAUUAUGUUUAUCCUGCCACACAUACUGCCAUCUGCCGGGUACACUACCC
.((((((((.....))..))))))(((((....------------.(-((-((....)))))((((....(((((............))))))))).....)))))........... ( -33.20)
>DroSec_CAF1 20993 97 + 1
CUGGCGGGCAUCCUGCCACCGC------CUCCG------------GA-CU-GCAAAUGCAGUGCAGCCAUUAUGUUUAUCCUGCCACACAUACUGCCAUCUGCCGGGCACACUACCC
.(((((((...)))))))..((------(..((------------((-((-((....)))))((((....(((((............)))))))))......))))))......... ( -29.30)
>DroSim_CAF1 7955 97 + 1
CUGGCGGGCAUCCUGCCACCGC------CUCCG------------GA-CU-GCAAAUGCAGUGCAGCCAUUAUGUUUAUCCUGCCACACAUACUGCCAUCUGCCGGGCACACUACCC
.(((((((...)))))))..((------(..((------------((-((-((....)))))((((....(((((............)))))))))......))))))......... ( -29.30)
>DroEre_CAF1 12282 93 + 1
CUGGCGGGCAUCCUGCCACCGC------CACUG------------GCUCC-GCAAAUGCAGUGCAGCCAUUAUGUUUAUCCUGCCACACAUACUGCCAUCUGCCGGGCACAC-----
.((((((((.....))..))))------))...------------((((.-(((.(((((((((((..............)))).......)))).))).))).))))....----- ( -29.05)
>DroYak_CAF1 21720 111 + 1
CUGGCGGGCAUCCUGCCACCGC------CACUGCCAGUGCCACUGCCUCCGGCAAAUGCAGUGCAGCCAUUAUGUUUAUCCUGCCACACAUACUGCCAUCUGCCGGGCACACUACAC
.((((((((.....))..))))------)).....((((....((((..(((((.(((((((((((..............)))).......)))).))).))))))))))))).... ( -35.25)
>consensus
CUGGCGGGCAUCCUGCCACCGC______CUCCG____________GA_CU_GCAAAUGCAGUGCAGCCAUUAUGUUUAUCCUGCCACACAUACUGCCAUCUGCCGGGCACACUACCC
.(((((((...)))))))..............................((.(((.(((((((((((..............)))).......)))).))).))).))........... (-22.55 = -22.31 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:14 2006