| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,222,234 – 16,222,334 |
| Length | 100 |
| Max. P | 0.933993 |
| Location | 16,222,234 – 16,222,334 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 84.66 |
| Mean single sequence MFE | -34.80 |
| Consensus MFE | -28.47 |
| Energy contribution | -29.03 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.92 |
| Structure conservation index | 0.82 |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.933993 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16222234 100 - 20766785 CACACAUACAGCUCGGGCUGUAUAUCAUAGGCCGUAGCAGG-----------GGCCAUUCGCUCGGCUUUUAGCUAAGCUUUGCUUAUGGCCCGGCCAGCAAAUUAUCAAA .....(((((((....)))))))......((((.......(-----------((((((..((..(((((......)))))..))..))))))))))).............. ( -37.61) >DroPse_CAF1 15778 92 - 1 --CGGAAACAGGACAUGUUGUACAUCAUAGGCUG------G-----------GGCCAUUCACUCGGCUUUUAGCUAAGCUUUGCUUAUGGCCCGGCCAGCAAAUUAUCAAA --.(..((((.....))))...)......(((((------(-----------(.((((...(..(((((......)))))..)...))))))))))).............. ( -27.40) >DroSec_CAF1 3278 96 - 1 ----CAUACAGCUCGGGCUGUACAUCAUAGGCCGUAGCUGG-----------GGCCAUUCGCUCGGCUUUUAGCUAAGCUUUGCUUAUGGCCCGGCCAGCAAAUUAUCAAA ----....((((((((.((((.....)))).))).)))))(-----------((((((..((..(((((......)))))..))..))))))).................. ( -40.20) >DroEre_CAF1 7979 97 - 1 ---ACAUACAGCUCGGGCUGUACAUCAUAGGCCGUUCCAGG-----------GGCCAUUCGCUUGGCUUUUAGCUAAGCUUUGCUUAUGGCCCGGCCAGCAAAUUAUCAAA ---...((((((....)))))).......(((((..(((..-----------(((.....(((((((.....)))))))...)))..)))..))))).............. ( -38.00) >DroYak_CAF1 14421 110 - 1 -ACACAUACAGCACGGGCUGUACAUCAUAGGCCGUUUCAGGGCAGGGAAGUAGGCCAUUCGCUCGGCUUUUAGCUAAGCUUUGCUUAUGGCCCGGCCAGCAAAUUAUCAAA -.........((((((.((((.....)))).)))).....(((.(((..((((((.....(((..((.....))..)))...))))))..))).))).))........... ( -38.20) >DroPer_CAF1 15721 92 - 1 --CGGAAACAGGACAUGUUGUACAUCAUAGGCUG------U-----------GGCCAUUCACUCGGCUUUUAGCUAAGCUUUGCUUAUGGCCCGGCCAGCAAAUUAUCAAA --.(..((((.....))))...)......(((((------.-----------((((((...(..(((((......)))))..)...))))))))))).............. ( -27.40) >consensus __CACAUACAGCACGGGCUGUACAUCAUAGGCCGU__CAGG___________GGCCAUUCGCUCGGCUUUUAGCUAAGCUUUGCUUAUGGCCCGGCCAGCAAAUUAUCAAA ......((((((....)))))).......(((((..................((((((..((..(((((......)))))..))..))))))))))).............. (-28.47 = -29.03 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:33 2006