| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,199,047 – 16,199,159 |
| Length | 112 |
| Max. P | 0.539840 |
| Location | 16,199,047 – 16,199,159 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.04 |
| Mean single sequence MFE | -27.71 |
| Consensus MFE | -20.91 |
| Energy contribution | -20.95 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539840 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16199047 112 - 20766785 --AGCUGCAUGAUGCAU-CAACUUGUUCUGCAACGCAUAGCAACUUCGCUCGGUUUUACAAGAAGCCCAACAACUUUGAGGUGUGCAUAAUCCCACAACGCAACU-----ACAUGCUGCA --.((.(((((.(((.(-(((.(((((.(((...))).)))))........((((((....))))))........))))(.((((........)))).))))...-----.))))).)). ( -25.30) >DroSec_CAF1 13283 113 - 1 --AGCUGCAUGAUGCACCCAACUUGUUCCACAUCGCAUGGCAACUUCGCUCGUUUUUACAAGAAGCCAUACAACUUCGAGGUGUGCAUAAUCCCACAACGCAGCU-----ACAUGCUGCA --.........((((((((...((((........((..(....)...))........))))((((........))))..)).))))))...........(((((.-----....))))). ( -27.49) >DroSim_CAF1 13139 113 - 1 --AGCUGCAUGAUGCACCCAACUUGUUCCGCAUCGCAUAGCAACUUCGCUCGGUUUUACAAGAAGCCAUACAACUUCGAGGUGUGCAUAAUCCCACAACGCAGCU-----ACAUGCUGCA --.((((..((((((..............))))))..)))).((((((...((((((....)))))).........))))))(((........)))...(((((.-----....))))). ( -29.64) >DroEre_CAF1 13345 117 - 1 --AGCCGGAUGAUGCAC-CAACUUGUUCUGCAUCGCAUAGCAACUUCCCUCGGUUUUACAAGAAGCCAUACAACUUCGAGGUGUGCAUAAUCCCACAACCCAACUAAAGUACAUGCUGCA --.((.((((.((((((-....(((((.(((...))).)))))....(((((......)..((((........)))))))).)))))).))))..............(((....))))). ( -27.00) >DroYak_CAF1 13895 114 - 1 AAAGCCGCAUGAUGCAG-CAACUUGUUCUGCAUCGCAUAGCAACUUCCCCCGGUUUUACAAGAAGCCAUACAACUUCGAGGUGUGCAUAAUCCCACCAGCCAACU-----ACAUGCUGCA ...((.(((((((((((-.((....)))))))))(((((.(..........((((((....))))))...(......).).)))))...................-----..)))).)). ( -29.10) >consensus __AGCUGCAUGAUGCAC_CAACUUGUUCUGCAUCGCAUAGCAACUUCGCUCGGUUUUACAAGAAGCCAUACAACUUCGAGGUGUGCAUAAUCCCACAACGCAACU_____ACAUGCUGCA ...((.(((((((((...................)))).((((((((....(......)..((((........))))))))).))).........................))))).)). (-20.91 = -20.95 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:24 2006