Locus 497

Sequence ID 2R_DroMel_CAF1
Location 2,730,051 – 2,730,149
Length 98
Max. P 0.987202
window947

overview

Window 7

Location 2,730,051 – 2,730,149
Length 98
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 75.05
Mean single sequence MFE -33.16
Consensus MFE -15.48
Energy contribution -15.92
Covariance contribution 0.44
Combinations/Pair 1.22
Mean z-score -2.39
Structure conservation index 0.47
SVM decision value 2.07
SVM RNA-class probability 0.987202
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2730051 98 - 20766785
GCUUCCAGCCACAAUUGAAUUGGCCAUUAAAGUCAAAUGCGAAUUGAGGAAUGGCUGCUGGCCGGCGGGGGAGUCCUCC------GCCUCCUCCGCAUGCUUCU
(((..((((((...((.((((.((.(((.......))))).)))).))...))))))..)))..(((((((((......------..)))))))))........ ( -36.80)
>DroSec_CAF1 14081 103 - 1
GCUUGCAGCCACAAUUGAAUUGGCCAUUAAAGUCAAAUGCGAAUUGAGGAAUGGCUGCUGGCCGGCGGGGGAGUCCUCCUCCGCC-CCUCCUCUUCCUGCUUCU
(((.(((((((...((.((((.((.(((.......))))).)))).))...))))))).))).(((((((((....)))))))))-.................. ( -40.90)
>DroEre_CAF1 5476 79 - 1
GCU-CCAGCCACAAUUGAAUUGGCCAUUAAAGUCAGAUGCGAAUUGAGGAAUGGCUGCUGGCCGGCGGGGGAGUCCUAC------------------------U
(((-((.(((.(....)....(((((....(((((..(.(.......).).)))))..))))))))...))))).....------------------------. ( -24.80)
>DroYak_CAF1 14242 89 - 1
GCUUUCAGCCACAAUUGAAUUGGCCAUUAAAGUCACAUUUGAAUUGAGGAAUGGCUGCUGGCCGGCGGGGGAGUCCUGCU------CCUCCUC---------CU
(((..(((((((((((.((.((((.......))))...)).))))).....))))))..))).((.(((((((.....))------))))).)---------). ( -33.90)
>DroAna_CAF1 13395 77 - 1
GCC-AGAGCCACAAUUGAAUUGGCCAUUAAAGUCAAAUGCGAAUUGAGGAAUGGCAG--GGUCCACG---GACUC---------------------AGGCUCUG
..(-((((((............((((((....((((.......))))..)))))).(--((((....---)))))---------------------.))))))) ( -29.40)
>consensus
GCUUCCAGCCACAAUUGAAUUGGCCAUUAAAGUCAAAUGCGAAUUGAGGAAUGGCUGCUGGCCGGCGGGGGAGUCCUCC_______CCUCCUC_____GCU_CU
(((..((((((...((.((((.((.(((.......))))).)))).))...))))))..))).(((......)))............................. (-15.48 = -15.92 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:13 2006