| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,196,510 – 16,196,625 |
| Length | 115 |
| Max. P | 0.928343 |
| Location | 16,196,510 – 16,196,625 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.77 |
| Mean single sequence MFE | -30.01 |
| Consensus MFE | -16.91 |
| Energy contribution | -17.30 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.928343 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16196510 115 - 20766785 ---UGCCCAUAUUUUGAUUUGGCAAUUGGUUUCCUUGCAAGCCAAACGCAUAUGAGCUUCUGCACAGGCGGGCCAUGGAAAUCAGUUGGCUUAGUGGCGGCCAAAACCGAAUCAAACC-- ---.........((((((((((((((((((((((.((...(((...(((...((.((....)).)).)))))))).))))))))))))(((....)))........))))))))))..-- ( -39.60) >DroSec_CAF1 10839 99 - 1 ---UGCCCAUAUUUUGAU-UGCCAAUUGGUUUCCUUGCAAGCCAAACCCAUAUGAGCU--------------CCAUGGAAAUCAGUUGGCUUAGUGGCGGCCAAAACCG-AAUAAACC-- ---.(((((.....))..-.((((((((((((((.((..(((((........)).)))--------------.)).)))))))))))))).....)))((......)).-........-- ( -29.80) >DroSim_CAF1 10672 100 - 1 ---UGCCCAUAUUUUGAUUUGCCAAUUGGUUUCCUUGCAAGCCAAACGCAUAUGAGCU--------------CCAUGGAAAUCAGUUGGCUUAGUGGCGGCCAAAACGA-AUCAAACC-- ---.........((((((((((((((((((((((.((..(((((........)).)))--------------.)).))))))))))))))....(((...)))....))-))))))..-- ( -31.10) >DroEre_CAF1 10834 113 - 1 ---UGCCCAUAUUGUGAUUUGCCAAUUGGUUUCCUUGCAAGCCAAACGCAUAUAAGCU-CCACACAUGCGGACCAUGGAAAUCAGUUGGCUUAGUAGCGGCCAAACCAA-AUCAAACC-- ---.(((..(((((......((((((((((((((.(((.........))).....(.(-((.(....).))).)..)))))))))))))).)))))..)))........-........-- ( -30.60) >DroYak_CAF1 11231 113 - 1 ---UACCCAUAUUUUGAUUUGCCAAUUGGUUGGCUUGCAAGCCAAACGCAUAUAAGCU-CCACUCAUGCGGACCAUGGAAAUCAGUUGGCUUAGUAGCGGCCAAACCAA-AUCAAACC-- ---.........((((((((((((..(((((((((....))))...(((((.......-......))))))))))))).......((((((.......))))))..)))-))))))..-- ( -31.42) >DroAna_CAF1 11062 109 - 1 CAGUCCCCUCAUU---AUUUACUUAUUGGCUUCUUUCAAAACCAAAUUCAUUGAUGGU-G---ACA---GCGCAGUAGAAAUCAUUAGGCUUAGUGGUGGCCCAACCAA-AUCAUAUCCC ..(..((.(((((---(....((((.((..((((...............((((.((..-.---.))---...))))))))..)).))))..)))))).))..)......-.......... ( -17.56) >consensus ___UGCCCAUAUUUUGAUUUGCCAAUUGGUUUCCUUGCAAGCCAAACGCAUAUAAGCU_C___ACA___GG_CCAUGGAAAUCAGUUGGCUUAGUGGCGGCCAAAACAA_AUCAAACC__ ....(((..((((.......(((((((((((((((((.....)))..((......))...................))))))))))))))..))))..)))................... (-16.91 = -17.30 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:23 2006