Locus 4967

Sequence ID 2R_DroMel_CAF1
Location 16,188,336 – 16,188,451
Length 115
Max. P 0.625408
window7952

overview

Window 2

Location 16,188,336 – 16,188,451
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 70.71
Mean single sequence MFE -33.54
Consensus MFE -18.13
Energy contribution -19.02
Covariance contribution 0.89
Combinations/Pair 1.05
Mean z-score -1.59
Structure conservation index 0.54
SVM decision value 0.19
SVM RNA-class probability 0.625408
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16188336 115 - 20766785
AUAU-----AGAUUGAUAACAAGUAGCAGACCAGUCUGCCUCCAAUUACUGUUCACCUGAAAACCGCGUGGUGGAGCUGGGGGGCACAAGCUUCUCCGAUGGCUUCGGUCAUGGUCAGGC
....-----....(((..(((.((((((((....))))).......)))))))))(((((...((...(((.((((((.(......).)))))).)))(((((....)))))))))))). ( -34.11)
>DroSec_CAF1 2048 119 - 1
ACACUUAAUAGAUACGAUACAAGUAGCAGACCAGUCUGCCUCCAAUUACUGCUCACCUGAAACUCGCGUGGUUGAGCUGGG-GGCAGCGGGUUCUCCGAUGGCUUCGGUCAUGGUCAGAC
..........(.(((.......))).).((((...(((((((((......(((((((............)).)))))))))-)))))(((.....)))(((((....))))))))).... ( -39.20)
>DroSim_CAF1 2077 92 - 1
ACAC-----------AAAACAAGUAGCAGACCAGUCUGCCUCCAAUUACUGCUCACCUGAAAC----------------GA-ACCAGCGGGUUCUCCGAUGGCUUCGGUCAUGGUCAGGC
....-----------.......(..(((((....)))))..).............(((((...----------------((-(((....))))).((.(((((....)))))))))))). ( -28.60)
>DroEre_CAF1 2070 105 - 1
--------UAGUUAUAAAAUAAGUGGCAGACCAGUCUGCUUCCAAUUACUGCUCACCUGAAAUCUC------UGAGCUGGG-GGCAGAGCGUGCUCCGGUGGCUUCGGUCAUGGUCACGC
--------..(((((.......))))).......((((((((((......(((((...(....)..------)))))))))-))))))(((((..(((.((((....))))))).))))) ( -37.80)
>DroYak_CAF1 2166 95 - 1
ACAA--AAGAGAUGUAAAAUAAAAAGCAGACCAGUCUGCUUCCAAUUACUGCUCACCUGAAAUCUC------CCAG-----------------CUCCGAUGGCUUCGGUCACGGUCAGGC
....--..(((..((((......(((((((....)))))))....))))..))).(((((......------....-----------------..(((.((((....)))))))))))). ( -28.00)
>consensus
ACAC_____AGAUAUAAAACAAGUAGCAGACCAGUCUGCCUCCAAUUACUGCUCACCUGAAACCCC______UGAGCUGGG_GGCAGAGGGUUCUCCGAUGGCUUCGGUCAUGGUCAGGC
.........................(((((....)))))................(((((...............((......))..........(((.((((....)))))))))))). (-18.13 = -19.02 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:21 2006