Locus 4966

Sequence ID 2R_DroMel_CAF1
Location 16,184,330 – 16,184,433
Length 103
Max. P 0.692757
window7951

overview

Window 1

Location 16,184,330 – 16,184,433
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 81.14
Mean single sequence MFE -33.80
Consensus MFE -24.84
Energy contribution -24.36
Covariance contribution -0.48
Combinations/Pair 1.30
Mean z-score -1.66
Structure conservation index 0.73
SVM decision value 0.33
SVM RNA-class probability 0.692757
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16184330 103 - 20766785
CAUCUGGAUCUGGAUCUGGCUUGGGAUCUGGAUCUAGUAUGGUGUCCGAUUCGGUAUCGAUAUCCCCCAGGGACAGUACCGUGACCAAUGGUGACGAUAAGCA
((((((((((..(((((......)))))..))))))).))).((((......(((((.(...((((...))))).)))))((.(((...))).)))))).... ( -36.20)
>DroSec_CAF1 28223 103 - 1
CAUCUGGAUCUGGAUCUGUUUUGGGAUCUGGAUCUGAUAUAGUGUCCGAUUCGGUAUCGAUAUCCCCCCGGGACAGCACCGUGACCAACGGUGACGAUAAGCA
.(((.(((((..(((((......)))))..))))))))...((..(((...)))(((((...((((...))))...((((((.....)))))).))))).)). ( -35.30)
>DroSim_CAF1 28427 103 - 1
CAUCUGGAUCUGGAUCUGUUUUGGGAUCAGGAUCUGAUAUAGUGUCCGAUUCGGUAUCGAUAUCCCCCAGGGACAGCACCGUGACCAACGGUGACGAUAAGCA
...(((((((.((((((((..(.((((....)))).).)))).)))))))))))(((((...((((...))))...((((((.....)))))).))))).... ( -34.90)
>DroEre_CAF1 28808 91 - 1
CAUCUGGAUC------------GGGAUCCGGAUCUAGUACAGUGUCUGAUUCGGCAUCGAUAUCCCCCAGGGACAGCACUGUGAUUGAUGGUAGCAACAAGCA
((((((((((------------.(....).)))))).(((((((.(((..(((....)))..((((...))))))))))))))...))))...((.....)). ( -30.10)
>DroYak_CAF1 28684 91 - 1
CAUCCGGAUC------------GGGAUCCGGAUCUAGUACGGUGUCUGAUUCGGCAUCGAUAUCUCCCAGGGAGAGCACCGUGAUCGAUGGAAGCGACAAGCA
..(((((((.------------...)))))))((((.((((((((.....(((....)))..(((((...))))))))))))).....)))).((.....)). ( -32.50)
>consensus
CAUCUGGAUCUGGAUCUG__UUGGGAUCCGGAUCUAGUAUAGUGUCCGAUUCGGUAUCGAUAUCCCCCAGGGACAGCACCGUGACCAAUGGUGACGAUAAGCA
.((((((((((.((......)).))))))))))....((((((((.((((.....))))...((((...))))..)))))))).....((....))....... (-24.84 = -24.36 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:20 2006