Locus 4964

Sequence ID 2R_DroMel_CAF1
Location 16,183,438 – 16,183,543
Length 105
Max. P 0.609451
window7948

overview

Window 8

Location 16,183,438 – 16,183,543
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 85.20
Mean single sequence MFE -32.55
Consensus MFE -22.13
Energy contribution -23.80
Covariance contribution 1.67
Combinations/Pair 1.00
Mean z-score -2.98
Structure conservation index 0.68
SVM decision value 0.15
SVM RNA-class probability 0.609451
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16183438 105 - 20766785
AGCGCUCCACCUGCCGUAACCAUAAGCCCAGUCGUGGCACAACCCUCACCGACACCGGUGGCCAUCACGGCCUCCAACUAAAAUCCAGUUCUGGUGGAUCCGUAA
.(((.((((((.(((((........((((....).))).......((((((....)))))).....)))))....((((.......))))..))))))..))).. ( -31.60)
>DroSec_CAF1 27328 105 - 1
AGCGCUCCACCUGCCGUAACCAUAACCCCGGUCGUGGCACAACCCUCACCAACACCGGUGGCCAUCACGGCCUCCAACUAAAAUCCAGUUCUGGUGGAUCCGUAA
.(((.(((((((((((..(((........)))..))))).................((.((((.....)))).)).................))))))..))).. ( -35.90)
>DroSim_CAF1 27532 105 - 1
AGCGCUCCACCUGCCGUAACCAUAACCCCGGUCGUGGCACAACCCUCACCAACACCGGUGGCCAUCACGGCCUCCAACUAAAAUCCAGUUCUGGUGGAUCCGUAA
.(((.(((((((((((..(((........)))..))))).................((.((((.....)))).)).................))))))..))).. ( -35.90)
>DroEre_CAF1 27934 99 - 1
ACCGCUCCACCUGCCGU------AACCCCGGUCGUGGCACAACCCUCACCAACACCGGUGGCCAUCACGGCCUCCAACUAAAAUCCAGCUCUGGUGGAUCCGUAA
((.(.(((((((((((.------.((....))..))))).................((.((((.....)))).)).................)))))).).)).. ( -32.20)
>DroYak_CAF1 27801 105 - 1
ACCGCUCCACCUGCCGUAACCGUAACCCCGGUCGUGGCACAACCCCCACCAACACCGGUGGCCAUCACGGCCUCCAACUAAAAUCCAGCUCUGGUGGAUCCGUAA
((.(.(((((((((((..((((......))))..))))).................((.((((.....)))).)).................)))))).).)).. ( -36.20)
>DroAna_CAF1 47251 97 - 1
ACGGCUCCAGCUGCCGUAACCU------CAAACGUUCCACCACCUUCGACCGCUCCGGUGGCCAUUGCGGCCUCCAACUAAAGCAUCGUU-UCGUGUCUCCGCA-
(((((.......))))).....------.....((.....(((...(((..(((..((.((((.....)))).))......))).)))..-..))).....)).- ( -23.50)
>consensus
ACCGCUCCACCUGCCGUAACCAUAACCCCGGUCGUGGCACAACCCUCACCAACACCGGUGGCCAUCACGGCCUCCAACUAAAAUCCAGUUCUGGUGGAUCCGUAA
.....(((((((((((..((..........))..))))).................((.((((.....)))).)).................))))))....... (-22.13 = -23.80 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:17 2006