| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,174,051 – 16,174,171 |
| Length | 120 |
| Max. P | 0.604889 |
| Location | 16,174,051 – 16,174,171 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.83 |
| Mean single sequence MFE | -46.50 |
| Consensus MFE | -30.37 |
| Energy contribution | -30.60 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.604889 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16174051 120 + 20766785 UCGAUUGUGGCAAGAAACGCCAUGGACGGAGCGAGGGAACUGGAGAGCCUGCAGAUGCAGGAGAAUCCCCUGUCCUGUGACUGCAGCAUUCGUCCAUUUGCCGAGUGGCUGCAGGAGUCG .((((((((((.......)))))((((((....((....))(((...(((((....)))))....))).)))))).....((((((((((((.(.....).))))).))))))).))))) ( -48.40) >DroVir_CAF1 25456 120 + 1 UCCAUUGUGGCACGGAAUGCCAUGGAUCGGGCACAGGAGCUGCAGAGCCUGCAGAUGCAGGAUAAUCCGCUCUCCUGUGACUGCAGCAUACGACCCUUUGCCGAAUGGCUGCAGGUCUCC ((((...(((((.....)))))))))..(((((((((((..((.((.(((((....)))))....)).)).)))))))).(((((((...((.........))....)))))))..))). ( -49.40) >DroGri_CAF1 28160 120 + 1 UCCAUUGUGGCCAGGAAUGCCAUGGAUCGUGCCCAGGAGCUGCAAAGCCUGCAAAUGCAGGAUAAUCCACUGUCCUGCGACUGCAGCAUUCGACCCUUUGCCGAGUGGCUGCAGGUGUCC ....(((..((((((....)).....(((.((..(((.(((....)))(((((..(((((((((......)))))))))..)))))........)))..))))).))))..)))...... ( -44.00) >DroWil_CAF1 27120 120 + 1 UCCAUUGUGGCCCACAAUGCUAUGGAUGGAGCCAAGGAGUUGCAGAGCCUUCUAAUGCAGGAAAAUCCUUUAUCCUGCGACUGUAGUAUACGUCCAUUUGCCGAAUGGUUGCAGGUCACC ......((((((..((((((.(((((((..((...(.((((((((.((........))(((.....))).....)))))))).).))...)))))))..))......))))..)))))). ( -35.30) >DroMoj_CAF1 27403 120 + 1 UCGAUCGUGGCCAGAAAUGCCAUGGAUCGCGCACAGGAGCUGCAGAGCUUGCAGAUGCAGGAGAAUCCGCUGUCCUGCGACUGCAGCAUUCGUCCUUUCGCCGAGUGGCUGCAGGUCUCC .((((((((((.(....)))))).)))))......(((.((((((...((((((.(((((((.(......).))))))).))))))((((((.(.....).)))))).)))))).))).. ( -51.10) >DroAna_CAF1 37421 120 + 1 UCCAUUGUGGCACGCAACGCCAUGGACGGAGCCCGGGAGCUGCAGAGUCUACAGAUGCAGGAGAAUCCAUUAUCGUGCGACUGUAGCAUCCGGCCUUUCGCCGAGUGGCUCCAGGAAUCC (((((.(((........))).))))).(((..((.(((((..(.((..((((((.((((.((..........)).)))).))))))..))((((.....)))).)..))))).))..))) ( -50.80) >consensus UCCAUUGUGGCAAGAAAUGCCAUGGAUCGAGCCCAGGAGCUGCAGAGCCUGCAGAUGCAGGAGAAUCCACUGUCCUGCGACUGCAGCAUUCGUCCAUUUGCCGAGUGGCUGCAGGUCUCC ....(((((((.......)))))))..........(((.(((((..((.(((((.(((((((.(......).))))))).)))))))............(((....))))))))...))) (-30.37 = -30.60 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:15 2006