Locus 4955

Sequence ID 2R_DroMel_CAF1
Location 16,157,959 – 16,158,079
Length 120
Max. P 0.840271
window7936

overview

Window 6

Location 16,157,959 – 16,158,079
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 74.33
Mean single sequence MFE -47.75
Consensus MFE -20.44
Energy contribution -19.67
Covariance contribution -0.78
Combinations/Pair 1.37
Mean z-score -2.12
Structure conservation index 0.43
SVM decision value 0.75
SVM RNA-class probability 0.840271
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16157959 120 + 20766785
UGCUGUAUGGCUGUCUCGUUGUUGGCAUCGCAGGCCAGGCCAUACACGGUAUCGGUGGGCAGGGCAAUCACUUGGCCACCAAGCAGGCACUGGCGGGCCAACUGGAGAGCAGCCUCGUCG
........(((((((((...((((((.(((((((((..(((......)))...(((((.((((.......)))).))))).....))).)).))))))))))..)))).)))))...... ( -56.00)
>DroVir_CAF1 2123 120 + 1
CGCUGUAUGGCCUCCUCGUUGUUGGCAUCGCAUGCCAAACCAUACACUGUAUCUGUGGGCAAGCCUAUCACCUGGCCAAGAUGCAGGCACUGCUCGGCCAGUUUCAAGGCAUCCAGCGAU
(((((....(((.........(((((((...)))))))......(((.......))))))..((((.....((((((..((.((((...)))))))))))).....))))...))))).. ( -43.30)
>DroPse_CAF1 2066 120 + 1
CGUUGGAUGGCAUGCUCGUUGUUGGCAUCGCAUGCCAGCCCAUAGACGGUGUCUGUGGGCAGUGCUAUCACCUGACCGCCCAACAGGCAUUGACGUGCCACCUUCAGAGCGGCUCUAUCC
....((((((..(((((...(.(((((.((((((((.((((((((((...)))))))))).(.((..((....))..)).)....)))).)).))))))).)....)))))...)))))) ( -51.10)
>DroGri_CAF1 2384 120 + 1
CGCUGUAUGGCCUCCUCAUUGUUGGCAUCGCAGGCCAAGCCAUAAACCGUAUCUGUGGGCAGGGCAAUCACCUUCCCCAGCUGCAGGCAUUGCUCAGCCAGCUUCAGAGCGUUCAGCGCA
(((((.(((..(((......((((((...(((((((..(........)(((.(((.(((.(((.......))).)))))).))).))).))))...))))))....)))))).))))).. ( -41.80)
>DroWil_CAF1 2729 120 + 1
CGCUGAAUGGCUUGCUCGUUGUUGGCAUCGCAAGCCAAGCCGUAGACCGUAUCUGUGGGCAGAGCAAUGAUUUGACCUGCUAGCAGACACUGACGGGCAAGAUCUAAAGCUCGUUCUUCA
.(((......((((((((((.(((((.......)))))..........((.(((((.(((((..(((....)))..))))).))))).)).))))))))))......))).......... ( -43.20)
>DroPer_CAF1 2283 120 + 1
CGUUGGAUGGCAUGCUCGUUGUUGGCAUCGCAUGCCAGCCCAUAGACGGUGUCUGUGGGCAGUGCUAUCACCUGACCGCCCAACAGGCAUUGACGUGCCACCUUCAGAGCGGCUCUAUCC
....((((((..(((((...(.(((((.((((((((.((((((((((...)))))))))).(.((..((....))..)).)....)))).)).))))))).)....)))))...)))))) ( -51.10)
>consensus
CGCUGUAUGGCAUGCUCGUUGUUGGCAUCGCAUGCCAAGCCAUAGACGGUAUCUGUGGGCAGGGCAAUCACCUGACCACCCAGCAGGCACUGACGGGCCAGCUUCAGAGCGGCCACAUCA
.(((...(((((.........(((((.......)))))........(.((.(((((((.((((.......)))).)).....))))).)).)...))))).......))).......... (-20.44 = -19.67 +  -0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:05 2006