Locus 4954

Sequence ID 2R_DroMel_CAF1
Location 16,157,427 – 16,157,519
Length 92
Max. P 0.525487
window7935

overview

Window 5

Location 16,157,427 – 16,157,519
Length 92
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 76.88
Mean single sequence MFE -31.93
Consensus MFE -17.83
Energy contribution -19.28
Covariance contribution 1.45
Combinations/Pair 1.32
Mean z-score -1.56
Structure conservation index 0.56
SVM decision value -0.02
SVM RNA-class probability 0.525487
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16157427 92 - 20766785
UAGUGCGCGCCGGCGUGGCUCUCAAGCCGACACUCAGCCUCAUGGAGGAGUUCGGCAUUCGGGAGCUAAAAAUGAUGUAGUA--UAAGAGCUA--U-----
....((((....))))((((((((((((((.((((..((....))..))))))))).)).))))))).........(((((.--.....))))--)----- ( -34.00)
>DroSec_CAF1 1424 97 - 1
UAGUGCGCGCCGGCGUGGCUCUGAAGCCGACACUCAGCCUCAUGGACGAGUUCGGCAUUCGUCCGCGAAAAAUGCUGUAGUA--UAAGAGCUA--UUGACA
..((((((....))))((((((...(((((.((((..((....))..))))))))).((((....))))..((((....)))--).)))))).--...)). ( -33.30)
>DroSim_CAF1 2027 97 - 1
UUGUGCGCGCCGGCGUGGCUCUGAAGCCGACACUCAGCCUCAUGGAUGAGUUCGGCAUUCGGCCGCGAAAAAUGCUUUAGUA--UAAGAGCUA--UCGACA
........(.((((((((((..((((((((.(((((.((....)).)))))))))).))))))))))......(((((....--..)))))..--))).). ( -35.60)
>DroEre_CAF1 1435 92 - 1
UUGUGCGGGCCGGAGUCGCUCUAAAGCCCACGCUCAGCCUAAUGGAGGAGUUCGGCAUCCGGGCGCGAAAGAUACUUUAGU-------AGCUA--UCCAAA
((((((...(((((((((((....)))....((((..((....))..))))..))).)))))))))))..((((((.....-------)).))--)).... ( -28.20)
>DroYak_CAF1 1423 99 - 1
UUGUGCGAGCCGGAGUCGCUCUAAAGCCGACGCUCAGCCUGAUGGAGGAGUUCGGCAUCCGGGAGCGGAAAAUACUUUAGUAUAUAGGAGCUA--UCCAAA
...........(((...(((((...(((((.((((..((....))..))))))))).((((....))))..((((....))))...)))))..--)))... ( -36.10)
>DroAna_CAF1 1565 99 - 1
UAGUGAGAGCGGGAGUGGCUCUAAAGCCAACUCUAAUGCUAAUGGAGGAAUAUGGCAUUCAGACUCGGGAAAUUCUAUAAAU--UAAGCCUUACUUUCAAA
.((((((.((.(((((((((....)))).)))))(((((((((......)).))))))).......................--...))))))))...... ( -24.40)
>consensus
UAGUGCGCGCCGGAGUGGCUCUAAAGCCGACACUCAGCCUCAUGGAGGAGUUCGGCAUUCGGGCGCGAAAAAUGCUUUAGUA__UAAGAGCUA__UCCAAA
...............(((((((...(((((.((((..((....))..))))))))).((((....)))).................)))))))........ (-17.83 = -19.28 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:04 2006