Locus 4951

Sequence ID	2R_DroMel_CAF1
Location	16,146,512 – 16,146,615
Length	103
Max. P	0.998676

overview

Window 1

Location	16,146,512 – 16,146,615
Length	103
Sequences	5
Columns	103
Reading direction	forward
Mean pairwise identity	96.29
Mean single sequence MFE	-28.57
Consensus MFE	-25.48
Energy contribution	-25.60
Covariance contribution	0.12
Combinations/Pair	1.12
Mean z-score	-2.41
Structure conservation index	0.89
SVM decision value	3.18
SVM RNA-class probability	0.998676
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16146512 103 + 20766785
UCAUUAAGAAAACCGAUUCCGUGGGCACUUGUAGUGAAAAAAAACCAGACCAAUUAUCCCAUUGCCUGGCCCACGAAAUCGUGUUGUGGAGUGUAAACAAUUG
.((((.....((((((((.(((((((.(..((((((.......................))))))..)))))))).))))).)))....)))).......... ( -28.40)
>DroSec_CAF1 35485 102 + 1
UCAUUAAGAAAGCCGAUUUCGUGGGCACUUGUAAUGAAA-AAAACCAGACCAAUUAUCCCAUUGCCUGGCCCACGAAAUCGUGUUGUGGAGUGUAAACAAUUG
.((((.....((((((((((((((((.(..((((((...-...................))))))..)))))))))))))).)))....)))).......... ( -32.85)
>DroSim_CAF1 35685 102 + 1
UCAUUAAGAAAGCCGAUUCCGUGGGCACUUGUAAUGAAA-AAAACCAGACCAAUUAUCCCAUUGCCUGGCCCACGAAAUCGUGUUGUGGAGUGUAAACAAUUG
.((((.....((((((((.(((((((.(..((((((...-...................))))))..)))))))).))))).)))....)))).......... ( -28.45)
>DroEre_CAF1 36436 102 + 1
UCAUUAAGAAAGCCGAUUCAGUGGGCACUUGUAAUGAAA-AAAACCAGACCAAUUAUUCCAUUGCCUGGCCCACGAAAUCGUGUUGUUGAGUGUAAACAAUUG
.((((.....((((((((..((((((.(..((((((...-...................))))))..)))))))..))))).)))....)))).......... ( -26.55)
>DroYak_CAF1 36414 102 + 1
UCAUUAAGAAAGCCGAUUCAGUGGGUACUUGUAAUGAAA-AAAACCAGACCAAUUAUCCCAUUGGCUGGCCCACGAAAUCGUGUUGUGGAGUGUAAACAAUUG
.((((.....((((((((..(((((.........(....-)...((((.(((((......))))))))))))))..))))).)))....)))).......... ( -26.60)
>consensus
UCAUUAAGAAAGCCGAUUCCGUGGGCACUUGUAAUGAAA_AAAACCAGACCAAUUAUCCCAUUGCCUGGCCCACGAAAUCGUGUUGUGGAGUGUAAACAAUUG
.((((.....((((((((.(((((((....((((((.......................))))))...))))))).))))).)))....)))).......... (-25.48 = -25.60 +   0.12)

alignment

secondary structure

dotplot

Window 2

Location	16,146,512 – 16,146,615
Length	103
Sequences	5
Columns	103
Reading direction	reverse
Mean pairwise identity	96.29
Mean single sequence MFE	-27.78
Consensus MFE	-25.38
Energy contribution	-25.86
Covariance contribution	0.48
Combinations/Pair	1.08
Mean z-score	-2.06
Structure conservation index	0.91
SVM decision value	2.81
SVM RNA-class probability	0.997174
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16146512 103 - 20766785
CAAUUGUUUACACUCCACAACACGAUUUCGUGGGCCAGGCAAUGGGAUAAUUGGUCUGGUUUUUUUUCACUACAAGUGCCCACGGAAUCGGUUUUCUUAAUGA
..................(((.(((((((((((((((((((((......))).))))))........(((.....)))))))))))))))))).......... ( -30.90)
>DroSec_CAF1 35485 102 - 1
CAAUUGUUUACACUCCACAACACGAUUUCGUGGGCCAGGCAAUGGGAUAAUUGGUCUGGUUUU-UUUCAUUACAAGUGCCCACGAAAUCGGCUUUCUUAAUGA
......................((((((((((((((..(.((((..(.((((.....))))..-)..)))).)..).)))))))))))))............. ( -29.50)
>DroSim_CAF1 35685 102 - 1
CAAUUGUUUACACUCCACAACACGAUUUCGUGGGCCAGGCAAUGGGAUAAUUGGUCUGGUUUU-UUUCAUUACAAGUGCCCACGGAAUCGGCUUUCUUAAUGA
......................((((((((((((((..(.((((..(.((((.....))))..-)..)))).)..).)))))))))))))............. ( -29.00)
>DroEre_CAF1 36436 102 - 1
CAAUUGUUUACACUCAACAACACGAUUUCGUGGGCCAGGCAAUGGAAUAAUUGGUCUGGUUUU-UUUCAUUACAAGUGCCCACUGAAUCGGCUUUCUUAAUGA
...(((((.......)))))..((((((.(((((((..(.(((((((.((((.....))))..-))))))).)..).)))))).))))))............. ( -24.80)
>DroYak_CAF1 36414 102 - 1
CAAUUGUUUACACUCCACAACACGAUUUCGUGGGCCAGCCAAUGGGAUAAUUGGUCUGGUUUU-UUUCAUUACAAGUACCCACUGAAUCGGCUUUCUUAAUGA
......................((((((.((((((((((((((......))))).))))....-......((....))))))).))))))............. ( -24.70)
>consensus
CAAUUGUUUACACUCCACAACACGAUUUCGUGGGCCAGGCAAUGGGAUAAUUGGUCUGGUUUU_UUUCAUUACAAGUGCCCACGGAAUCGGCUUUCUUAAUGA
......................(((((((((((((((((((((......))).))))))........(((.....)))))))))))))))............. (-25.38 = -25.86 +   0.48)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:01 2006