| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,125,714 – 16,125,812 |
| Length | 98 |
| Max. P | 0.986614 |
| Location | 16,125,714 – 16,125,812 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 97.55 |
| Mean single sequence MFE | -15.02 |
| Consensus MFE | -13.30 |
| Energy contribution | -13.70 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658611 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16125714 98 + 20766785 ACAAGAAAUCAAAUCAGAGCCAAACGAAAACGAAAGUCCAAAAUUGUGGAAAUUAAUUAUUGCGCAAGCGCGGUCACCGACCAAAAAUCCCAUAUAUA .............................((....)).......(((((............((....))..((((...)))).......))))).... ( -15.50) >DroSec_CAF1 14974 96 + 1 ACAAGAAAUCAAAUCAGAGCCAAACGAAAACGAAAGUCCAAAAUUGUGGAAAUUAAUUAUUGCGCAAGCGCGGUCACCGACCAAAAAUCCCAUAUA-- .............................((....)).......(((((............((....))..((((...)))).......)))))..-- ( -15.50) >DroSim_CAF1 15071 98 + 1 ACAAGAAAUCAAAUCAGAGCCAAACGAAAACGAAAGUCCAAAAUUGUGGAAAUUAAUUAUUGCGCAAGCGCGGUCACCGACCAAAAAUCCCAUAAAUA .............................((....))......((((((............((....))..((((...)))).......))))))... ( -16.70) >DroEre_CAF1 15520 98 + 1 ACAAGAAAUCAAAUCAGAGCCAAACGAAAACGAAAGUCCAAAAUUGUGGAAAUUAAUUAUUGCGCAAGCGCGGCCACCGACCAAAAAUCCCAUAUACU ................(.(((.........(....)((((......))))...........((....))..))))....................... ( -13.70) >DroYak_CAF1 15369 98 + 1 ACAAGAAAUCAAAUCAGAGCCAAACGAAAACGAAAGUCCAAAAUUGUGGAAAUUAAUUAUUGCGCAAGCGCGGCCACCGACCAAAAAUCCCAUAUAUA ................(.(((.........(....)((((......))))...........((....))..))))....................... ( -13.70) >consensus ACAAGAAAUCAAAUCAGAGCCAAACGAAAACGAAAGUCCAAAAUUGUGGAAAUUAAUUAUUGCGCAAGCGCGGUCACCGACCAAAAAUCCCAUAUAUA .............................((....)).......(((((............((....))..((((...)))).......))))).... (-13.30 = -13.70 + 0.40)
| Location | 16,125,714 – 16,125,812 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 97.55 |
| Mean single sequence MFE | -22.82 |
| Consensus MFE | -21.50 |
| Energy contribution | -21.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.94 |
| SVM decision value | 2.05 |
| SVM RNA-class probability | 0.986614 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16125714 98 - 20766785 UAUAUAUGGGAUUUUUGGUCGGUGACCGCGCUUGCGCAAUAAUUAAUUUCCACAAUUUUGGACUUUCGUUUUCGUUUGGCUCUGAUUUGAUUUCUUGU .....(..(((..((..(((((.(.(((((....)))...........((((......))))...............))).)))))..))..)))..) ( -21.50) >DroSec_CAF1 14974 96 - 1 --UAUAUGGGAUUUUUGGUCGGUGACCGCGCUUGCGCAAUAAUUAAUUUCCACAAUUUUGGACUUUCGUUUUCGUUUGGCUCUGAUUUGAUUUCUUGU --...(..(((..((..(((((.(.(((((....)))...........((((......))))...............))).)))))..))..)))..) ( -21.50) >DroSim_CAF1 15071 98 - 1 UAUUUAUGGGAUUUUUGGUCGGUGACCGCGCUUGCGCAAUAAUUAAUUUCCACAAUUUUGGACUUUCGUUUUCGUUUGGCUCUGAUUUGAUUUCUUGU .....(..(((..((..(((((.(.(((((....)))...........((((......))))...............))).)))))..))..)))..) ( -21.50) >DroEre_CAF1 15520 98 - 1 AGUAUAUGGGAUUUUUGGUCGGUGGCCGCGCUUGCGCAAUAAUUAAUUUCCACAAUUUUGGACUUUCGUUUUCGUUUGGCUCUGAUUUGAUUUCUUGU .....(..(((..((..(((((.(((((((....)))...........((((......))))...............)))))))))..))..)))..) ( -24.80) >DroYak_CAF1 15369 98 - 1 UAUAUAUGGGAUUUUUGGUCGGUGGCCGCGCUUGCGCAAUAAUUAAUUUCCACAAUUUUGGACUUUCGUUUUCGUUUGGCUCUGAUUUGAUUUCUUGU .....(..(((..((..(((((.(((((((....)))...........((((......))))...............)))))))))..))..)))..) ( -24.80) >consensus UAUAUAUGGGAUUUUUGGUCGGUGACCGCGCUUGCGCAAUAAUUAAUUUCCACAAUUUUGGACUUUCGUUUUCGUUUGGCUCUGAUUUGAUUUCUUGU .....(..(((..((..(((((.(.(((((....)))...........((((......))))...............))).)))))..))..)))..) (-21.50 = -21.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:55 2006