Locus 4938

Sequence ID 2R_DroMel_CAF1
Location 16,103,567 – 16,103,667
Length 100
Max. P 0.974319
window7915

overview

Window 5

Location 16,103,567 – 16,103,667
Length 100
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 95.43
Mean single sequence MFE -16.63
Consensus MFE -14.20
Energy contribution -14.20
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.95
Structure conservation index 0.85
SVM decision value 1.73
SVM RNA-class probability 0.974319
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16103567 100 - 20766785
AAACGAAAAAUACCUCGGCCAAAAAAGGCAAAUAAAAGCGAAUUUUUU-CGCAAAACUGGAAAUCUAAACAGAGACAAAGGAGAUUCGUCACAAUCGCCAA
...(((........)))(((......)))........(((((....))-)))....(((..........))).......((.((((......)))).)).. ( -18.60)
>DroSec_CAF1 25466 101 - 1
AAACGAAAAAUACCUCGGCCAAAAAAGGCAAAUAAAAGCGAAUUUUUUGCACAAAACUGGAAAUCUAAACAGAGACAUAGGAGAUUCGUCACAAUCGCCAA
...(((...........(((......)))........((((((((((((.......(((..........))).....)))))))))))).....))).... ( -16.40)
>DroSim_CAF1 25531 101 - 1
AAACGAAAAAUACCUCGGCCAAAAAAGGCAAAUAAAAGCGAAUUUUUUGCACAAAACUGGAAAUCUAAACAGAGACAAAGGAGAUUCGUCACAAUCGCCAA
...(((...........(((......)))........(((((((((((........(((..........)))......))))))))))).....))).... ( -16.34)
>DroEre_CAF1 27937 98 - 1
AC---AAAAAUACCUCGGCCAAAAAAGGCAAAUAAAAGCGAAUUUUUUGCGCAAAACUGGAAAUCUAAGCAGAGACAAAGGAGAUUCGUCACAAUCGCCAA
..---........(((.(((((((((.((........))...))))))).)).....(((....)))....))).....((.((((......)))).)).. ( -15.80)
>DroYak_CAF1 25143 98 - 1
AC---AAAAAUACCUCAGCCAAAAAAGGCAAAUAAAAGCGAAUUUUUUGCGCAAAACUGGAAAUCUAAACAGAGACAAAGGAGAUUCGUCACAAUCGCCAA
..---........(((.(((((((((.((........))...))))))).)).....(((....)))....))).....((.((((......)))).)).. ( -16.00)
>consensus
AAACGAAAAAUACCUCGGCCAAAAAAGGCAAAUAAAAGCGAAUUUUUUGCGCAAAACUGGAAAUCUAAACAGAGACAAAGGAGAUUCGUCACAAUCGCCAA
..........................(((........(((((((((((........(((..........)))......))))))))))).......))).. (-14.20 = -14.20 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:45 2006