| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,101,635 – 16,101,730 |
| Length | 95 |
| Max. P | 0.903247 |
| Location | 16,101,635 – 16,101,730 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 77.27 |
| Mean single sequence MFE | -23.28 |
| Consensus MFE | -15.06 |
| Energy contribution | -15.07 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.65 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.903247 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16101635 95 - 20766785 CAAAUAAGUUGCAAACUUUGGAAAUGCUCAAGGAACAUUUCGCUGCCUACGAGGGCAAGAAAUGGUACAUGUGCAGCAUAAAACAUAAUACGAUU .......((((((..((((((......))))))..((((((..(((((....))))).)))))).......)))))).................. ( -26.00) >DroPse_CAF1 28701 83 - 1 AAAACAAGUUGGUUGUACUGGAAAUGCUCAAGGAGAAGUUCGCCCCCUACGAGGGCCACAACUGGUCUGUCCUUCGCCUAUAC------------ ...(((..(..(((((....(((...(((...)))...)))((((.......)))).)))))..)..))).............------------ ( -20.30) >DroSec_CAF1 23521 92 - 1 CAAAUAAGCUGCAAACUUUGGAAAUGCUCAAGGAACAUUUCGCUGGCUACGAGGGCAAGAAAUGGUGCAUGUGCUGCAUAAAACAU---ACGAUU .......((.(((..((((((......))))))..((((((..((.((....)).)).)))))).......))).)).........---...... ( -19.20) >DroSim_CAF1 23571 92 - 1 CAAAUAAGCUGCAAACUUUGGAAAUGCUCAAGGAACAUUUCGCUCCCUACGAGGGCAAGAAAUGGUGCAUGUGCUGCAUAAAACAU---ACGAUG .......((.(((..((((((......))))))..((((((...(((.....)))...)))))).......))).)).........---...... ( -21.20) >DroEre_CAF1 25623 91 - 1 CAAAUAAGCUGCAAACUUUGGAAAUGCUCAAGGAGCAUUUUGAUGCCUACGAGGGCAAGGAAUGGUACAUGCGCAGCUUACAA-AU---AUGAUU ....((((((((......(.(((((((((...))))))))).)(((((....)))))...............))))))))...-..---...... ( -28.60) >DroYak_CAF1 23158 84 - 1 CAAAUAAGCUGCAAACCUUGGAAAUGCUCAAGGAACAUUUUGCUGCCUACGAGGGCAAGGAAUGGUACAUGCGCAACUUACU-----------UU ....((((.(((...((((((......))))))..((((((..(((((....))))).))))))........))).))))..-----------.. ( -24.40) >consensus CAAAUAAGCUGCAAACUUUGGAAAUGCUCAAGGAACAUUUCGCUGCCUACGAGGGCAAGAAAUGGUACAUGCGCAGCAUAAAA_AU___ACGAUU .......((.((...((((((......))))))..((((((..(((((....))))).))))))........)).)).................. (-15.06 = -15.07 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:44 2006