Locus 4934

Sequence ID 2R_DroMel_CAF1
Location 16,099,025 – 16,099,127
Length 102
Max. P 0.935931
window7908

overview

Window 8

Location 16,099,025 – 16,099,127
Length 102
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 73.70
Mean single sequence MFE -25.80
Consensus MFE -14.33
Energy contribution -14.56
Covariance contribution 0.23
Combinations/Pair 1.40
Mean z-score -1.93
Structure conservation index 0.56
SVM decision value 1.25
SVM RNA-class probability 0.935931
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16099025 102 - 20766785
----AACAAUUUUCUGCUGCGGAUGGGGGCAGUACUGUUUUUUUAACAUUGAGUAUUGCACUUUUCACAGCCCGAAAAUGUUAGCAACUGCCUU-AUACUAACAAUU
----....((((((.((((.(((.((..(((((((((((.....)))....)))))))).)).))).))))..))))))(((((..........-...))))).... ( -25.12)
>DroPse_CAF1 24864 101 - 1
GGUGGAUACCUUCAAGCUGGGGGAUGGG-CAAUACUGUGUUGUAUUUCACCAGUAUUGCACACCCACUGGCCUGAAAGUGCCUACUGCUGGGUUC-----AACAACU
(((((.(((.((((.((..((((.((.(-((((((((((........)).))))))))).))))).)..)).)))).))).))))).........-----....... ( -38.30)
>DroSec_CAF1 20418 102 - 1
----AACAAUUUUCUGCUGCGCAUUGGGGCACUACUGUUUUUUUUUAAUUGAGUAUUGCACUUUUCACAGCCUUAAAAUGUUAGCAACUGCCUA-AUACUAACAAUU
----...........((((.(.(..((.(((.((((...............)))).))).))..)).)))).......((((((..........-...))))))... ( -14.98)
>DroSim_CAF1 20611 102 - 1
----AACAAUUUUCUGCUGCGCAUUGGGGCACUACUGUUUUUUUUAAAUUGAGUAUUGCACUUUUCACAGCCUUAAAAUGUUAGCAACUGCCUA-AUACUAACAAUU
----...........((((.(.(..((.(((.((((((((.....))))..)))).))).))..)).)))).......((((((..........-...))))))... ( -15.82)
>DroEre_CAF1 21710 102 - 1
----AACAAUUUUCGGCUGUGGAGUGGGCUAGUACUGUGAUUUUAACAUUGAGUAUUGCACAUUCCCCAGCCUGAAAGUGUUUGCAUUUGCCAA-AUAUUAAAAAUU
----.......((((((((.((((((.((.(((((((((.......)))..)))))))).)))))).))))).)))(((((((((....).)))-)))))....... ( -31.00)
>DroYak_CAF1 20894 102 - 1
----AACAAUUUUCGGCUGUGGAUUGGGCUAGUACUGUGAUUUUAGCAUUAAGUAUUGCACAUUCCCCAGCCUGAAAGUGUUAGUAACUGCCAA-CUAAUAACAAUU
----....(((((((((((.(((.((.((.((((((.((((......)))))))))))).)).))).))))).))))))((((((........)-)))))....... ( -29.60)
>consensus
____AACAAUUUUCUGCUGCGGAUUGGGGCAGUACUGUGUUUUUAACAUUGAGUAUUGCACAUUCCACAGCCUGAAAAUGUUAGCAACUGCCUA_AUACUAACAAUU
....((((.((((..((((.(((.((.(.(((((((...............)))))))).)).))).))))..)))).))))......................... (-14.33 = -14.56 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:39 2006