Locus 4928

Sequence ID 2R_DroMel_CAF1
Location 16,086,075 – 16,086,178
Length 103
Max. P 0.596926
window7893

overview

Window 3

Location 16,086,075 – 16,086,178
Length 103
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 90.50
Mean single sequence MFE -31.88
Consensus MFE -24.70
Energy contribution -25.58
Covariance contribution 0.88
Combinations/Pair 1.08
Mean z-score -1.53
Structure conservation index 0.77
SVM decision value 0.13
SVM RNA-class probability 0.596926
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16086075 103 - 20766785
UUAAAGGAGGCUCCACUGUGCUGGGUCUGUUGCACCCAGGCACAGGUGAACAGCGAACGUGACGUGGAAACAGCGAC-AAAUUGUCA-AGGGAGCUUAGCAUAAA-
.......(((((((.((((((((((((....).))))).)))))).......((((...((.((((....)).)).)-)..))))..-..)))))))........- ( -36.00)
>DroSec_CAF1 7606 105 - 1
UUAAACGAGGCUCCACUGUACUGAGUUGGUUGCACCCAGGGACAGGUGAACAGCGAACGUGACGUGGAAACAGCGGCCUAAUUGUCAAAGGGAGCUUAUCAUACA-
.......(((((((.((....((((((.((((((((........))))..)))).)))....((((....)).)).........))).)))))))))........- ( -28.80)
>DroSim_CAF1 7816 103 - 1
UUAAAGGAGUCUUCACUGUACUGAGUUGGUUGCACCCAGGCACAGGUGAACAGCGAACGUGACGUGGAAACAGCGAC-AAAUUGUCA-AGGGAGCUUAGCAUAAA-
........((.(((((.((.....(((.((((((((........))))..)))).)))...))))))).)).(((((-.....)))(-((....))).)).....- ( -24.20)
>DroEre_CAF1 7649 103 - 1
UCAAAGGAGGCUCCACUGUGCUGGGUUGGUUGCACCCGGGCACAGGUGAACACCGAUCGUGACGGGGAAACAGCGAC-AAAUUGUCA-AGGGAGCUUAACAUAAA-
.......(((((((.(((((((.((.((....)).)).)))))))((.....(((.......)))(....).))(((-.....))).-..)))))))........- ( -35.20)
>DroYak_CAF1 7885 104 - 1
AGAAAGGAGGCUCCACUGUGCUGGGUUGGUUGCACCCAGGCACAGGUGAACACCGAUCGUGACGUGGAAACAGCGAC-AAAUUGUCA-AGGGAGCUUAACAUAAAA
.......(((((((.(((((((((((.......))))).)))))).........(((..((.((((....)).)).)-)....))).-..)))))))......... ( -35.20)
>consensus
UUAAAGGAGGCUCCACUGUGCUGGGUUGGUUGCACCCAGGCACAGGUGAACAGCGAACGUGACGUGGAAACAGCGAC_AAAUUGUCA_AGGGAGCUUAACAUAAA_
.......(((((((.(((((((((((.......))))).))))))..............(((((((....))..........)))))...)))))))......... (-24.70 = -25.58 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:25 2006