Locus 4916

Sequence ID 2R_DroMel_CAF1
Location 16,065,705 – 16,065,825
Length 120
Max. P 0.645912
window7874

overview

Window 4

Location 16,065,705 – 16,065,825
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.72
Mean single sequence MFE -40.20
Consensus MFE -27.41
Energy contribution -27.24
Covariance contribution -0.16
Combinations/Pair 1.35
Mean z-score -1.47
Structure conservation index 0.68
SVM decision value 0.23
SVM RNA-class probability 0.645912
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16065705 120 + 20766785
UACAAAAAGCUGUGCGGUCGGCAUAAUGAUGUCCUUACUGGUGGCCAAGCUUAUGGGUCGUAUAUCCUGACUAUAGACAAGGGGUUGCUGCAGCUGAACAAUGGCAAUGUCAUUGUUCAU
.......((((((((((((((.(((...(((.(((....(((......)))...))).))).))).))))))...(((.....))))).))))))((((((((((...)))))))))).. ( -37.50)
>DroPse_CAF1 140585 120 + 1
GACAAAGAGCUGAGCCGAUGGCUCGAUGCGGUCCUGCCUUGCGGCCAGGACAAUGGGCUGGAUAUUGCCGCUGUAGACGAGUGGCUGCUGUAGCUGAAUCAGCGCAAUGUCGUUGUUCAU
(((((....(((.((((..(((..(((...)))..)))...)))))))((((.((.(((((.....((((((.......)))))).((....))....))))).)).)))).)))))... ( -44.50)
>DroSim_CAF1 123341 120 + 1
UACAAAAAGCUGUGCCGUCGGCGUAAUGAUGUCCUUAUUGGUGGCCAAGCUUAUGGGUCGUAUAUUCUGACUAUAGACAAGGGGUUGCUGCAGCUGAACAAUGGCAAUGUCAUUGUUCAU
.......((((((((.(((((.(((...(((.(((....(((......)))...))).))).))).)))))....(((.....))))).))))))((((((((((...)))))))))).. ( -35.80)
>DroEre_CAF1 126192 120 + 1
UACAAAAAGCUGGGCAGUCGGCAUUACGACGUCUUGAUUGGUGGCCAAGCUAAUGGGUCGUAUAUCCUGGCUAUAGACAAGGGGUUGCUGCAGCUGAACAAUGGCAAUAUCAUUGUUCAU
.......(((((((((((((......)))).(((((.((.(((((((.......((((.....))))))))))).)))))))...)))).)))))(((((((((.....))))))))).. ( -40.61)
>DroYak_CAF1 130732 120 + 1
UACAAAAAGCUGGGCAGUAGGCAUUACGGUGUCCUGAUUGGUGGCCAAGCUAAUGGGUCGUAUAUCCUGGCUAUAGACAAGGGGUUGCUGCAGCUGAACAAUGGCAAUAUCAUUGUUCAU
.......((((..(((((((((((....))))(((.....(((((((.......((((.....))))))))))).....)))..)))))))))))(((((((((.....))))))))).. ( -36.71)
>DroPer_CAF1 134250 120 + 1
GACAAAGAGCUGAGCCGAUGGCUGGAUGCGGUCCUGCUUUGCGGCCAGGACAAUGGGCUGGAUAUUGCCGCUGUAGACGAGUGGCUGCUGCAGCUGAAUCAGCGCAAUGUCGUUGUUCAU
(((((....(((.((((..(((.((((...)))).)))...)))))))((((.((.(((((.....((((((.......)))))).((....))....))))).)).)))).)))))... ( -46.10)
>consensus
UACAAAAAGCUGAGCCGUCGGCAUAAUGAUGUCCUGAUUGGUGGCCAAGCUAAUGGGUCGUAUAUCCUGGCUAUAGACAAGGGGUUGCUGCAGCUGAACAAUGGCAAUGUCAUUGUUCAU
.......(((((.......(((((....))))).......((((((.........(((((.......)))))..........))))))..)))))((((((((((...)))))))))).. (-27.41 = -27.24 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:06 2006