Locus 4913

Sequence ID 2R_DroMel_CAF1
Location 16,060,831 – 16,060,925
Length 94
Max. P 0.984630
window7869

overview

Window 9

Location 16,060,831 – 16,060,925
Length 94
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 96.75
Mean single sequence MFE -24.63
Consensus MFE -23.22
Energy contribution -23.25
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -1.53
Structure conservation index 0.94
SVM decision value 1.98
SVM RNA-class probability 0.984630
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16060831 94 + 20766785
--AAACUCUCAACUCGGCGCACAGUGAGUGCAAAAAAUGUGUGCUCGUUGCGUUGUAAUUGCAUUUGCUAUUGCUUUGUUGUUGCUUUGCAAAAAA
--............(((((((((.((....)).....))))))).))(((((..(((((.(((...((....))..))).)))))..))))).... ( -26.00)
>DroSec_CAF1 114479 94 + 1
--AAACUCUCAACUCGGCGCACAGUGAGUGCAAAAAAUGUGUGCUCGUUGCGUUGUAAUUGCAUUUGCUAUUGCUUUGUUGUUGCCUUGCAAAAAA
--............(((((((((.((....)).....))))))).))(((((..(((((.(((...((....))..))).)))))..))))).... ( -25.10)
>DroSim_CAF1 118516 94 + 1
--AAACUCUCAACUCGGCGCACAGUGAGUGCAAAAAAUGUGUGCUCGUUGCGUUGUAAUUGCAUUUGCUAUUGCUUUGUUGUUGCCUUGCAAAAAA
--............(((((((((.((....)).....))))))).))(((((..(((((.(((...((....))..))).)))))..))))).... ( -25.10)
>DroEre_CAF1 121235 93 + 1
--AAACUCUCAACUCGGCGCACAGUGAGUGCAAAAAAUGUGUGCUCGUUGCGUUGUAAUUGCAUUUGCUAUUGCUUUGUUGUUGC-UUGCAAAAAA
--............(((((((((.((....)).....))))))).))(((((..(((((.(((...((....))..))).)))))-.))))).... ( -24.10)
>DroYak_CAF1 125754 93 + 1
--AAACUCUCAACUCGGCGCACAGUGAGUGCAAAAAAUGUGUGCUCGUUGCGUUGUAAUUGCAUUUGCUAUUGCUUUGUUGUUGC-UUGCAAAAAA
--............(((((((((.((....)).....))))))).))(((((..(((((.(((...((....))..))).)))))-.))))).... ( -24.10)
>DroAna_CAF1 124436 95 + 1
CAAAACUCUCAGCUCGGCGCACAGUGAGUGCAAAAAAUGUGUGCUCGUUGCGUUGUAAUUGCAUUUGCUUUUGCUUUGUUGUUAC-UUACAAAAAU
...........((.(((((((((.((....)).....))))))).))..))((.(((((.(((...((....))..))).)))))-..))...... ( -23.40)
>consensus
__AAACUCUCAACUCGGCGCACAGUGAGUGCAAAAAAUGUGUGCUCGUUGCGUUGUAAUUGCAUUUGCUAUUGCUUUGUUGUUGC_UUGCAAAAAA
..............(((((((((.((....)).....))))))).))(((((..(((((.(((...((....))..))).)))))..))))).... (-23.22 = -23.25 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:01 2006