Locus 4911

Sequence ID 2R_DroMel_CAF1
Location 16,045,522 – 16,045,625
Length 103
Max. P 0.529549
window7867

overview

Window 7

Location 16,045,522 – 16,045,625
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 96.89
Mean single sequence MFE -16.46
Consensus MFE -14.32
Energy contribution -14.00
Covariance contribution -0.32
Combinations/Pair 1.07
Mean z-score -1.30
Structure conservation index 0.87
SVM decision value -0.01
SVM RNA-class probability 0.529549
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16045522 103 + 20766785
CUUAAUCUAAGCCGCCUAAAUCUCUGAUAAACAGCAAACUAUUAUUGGCUUCCAUCAAAUUAGAAACUAAUUUAUUAGUUUAUUGGUUCAAAAUGAUUGAGUA
(((((((.((((((.........(((.....)))...........))))))......(((((((((((((....))))))).))))))......))))))).. ( -16.45)
>DroSec_CAF1 100305 103 + 1
CUUAAUCUAAGCCGCCUAAAUCUCUGAUAAACAGCAAUCUAUUAUUGGCUUCCAUCAAAUUAGAAACUAAUUUAUUAGUUUAUUGGUUCAAAAUGAUUGAGUA
(((((((......(((.......((((((((......((((...((((......))))..))))......))))))))......))).......))))))).. ( -16.54)
>DroSim_CAF1 103657 103 + 1
CUUAAUCUAAGCCGCCUAAAUCUCUGAUAAACAGCAAACUAUUAUUGGCUUCCAUCAAAUUAGAAACUAAUUUAUUAGUUUAUUGGUUCAAAAUGAUUGAGUA
(((((((.((((((.........(((.....)))...........))))))......(((((((((((((....))))))).))))))......))))))).. ( -16.45)
>DroEre_CAF1 106978 103 + 1
CUUAAUCUAAGCCGCCUAAAUCUCCAAUAAACAGCAAACUAUUACUAGCUUCCAUCAAAUUAGAAACUAAUUUAUUAGUUUAUUGGUUCAAAAUGAUUGAGCA
(((((((..((....))......((((((((((((............)))......(((((((...)))))))....)))))))))........))))))).. ( -16.40)
>DroYak_CAF1 110886 103 + 1
CUUAAUCUAAGCCGCCUAAAUCUCUGAUAAACAGCAAUCUAUUAUUGGCUACCAUCAAAUUAGAAACUAAUUUAUUAGUUUAUUGGUUCAAAAUGAUUGAGCA
(((((((..(((((.........(((.....)))...........)))))((((..((((((((((....))).)))))))..)))).......))))))).. ( -16.45)
>consensus
CUUAAUCUAAGCCGCCUAAAUCUCUGAUAAACAGCAAACUAUUAUUGGCUUCCAUCAAAUUAGAAACUAAUUUAUUAGUUUAUUGGUUCAAAAUGAUUGAGUA
(((((((..((....))......((((((((((((............)))......(((((((...)))))))....)))))))))........))))))).. (-14.32 = -14.00 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:59 2006