Locus 4907

Sequence ID 2R_DroMel_CAF1
Location 16,032,718 – 16,032,815
Length 97
Max. P 0.582820
window7860

overview

Window 0

Location 16,032,718 – 16,032,815
Length 97
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 81.34
Mean single sequence MFE -26.86
Consensus MFE -17.44
Energy contribution -17.02
Covariance contribution -0.42
Combinations/Pair 1.15
Mean z-score -1.57
Structure conservation index 0.65
SVM decision value 0.10
SVM RNA-class probability 0.582820
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16032718 97 + 20766785
CCC---GCCCAGCUAACAUGGCUAUGACUGCUAUAAAAUGUCAUCUUUUAUUAUGGCAA-AGGCUCAACUGGCGCAGACUGCGCCUAGACCGAGGCG-------GA-AU------
.((---((((((((...(((((.......)))))....((((((........)))))).-.))))...(((((((.....))))).))...).))))-------).-..------ ( -33.30)
>DroPse_CAF1 107815 99 + 1
---------CUCUUAACAUGGCUAUGACUGCUAUAAAAUGUCAUCUUUUAUUAUGGCAAAAGGCUCAAAUGGCGCAGACUGCGCCUAGACUGAGACA-------GAGAUCCCAUA
---------((((....(((((.......)))))....((((((........))))))...(.((((...(((((.....))))).....)))).))-------)))........ ( -24.60)
>DroSec_CAF1 87761 92 + 1
--------UCAGCUAACAUGGCUAUGACUGCUAUAAAAUGUCAUCUUUUAUUAUGGCAA-AGGCUGAACUGGCGCAGACUCCGCCUAGACCGAGGCG-------GA-AU------
--------((((((...(((((.......)))))....((((((........)))))).-.)))))).(((...)))..(((((((......)))))-------))-..------ ( -29.40)
>DroMoj_CAF1 219175 99 + 1
---------GUCCUGACUUGGCUGUGACUGCUAUAAAAUGUCAUCUUUUAUUAUGGCA--AGGCUCAACUGGCGCAGACUGCGCCUAGACUAAGGCGC----CCCAGACUCCAA-
---------(((.((....(((((((.(((((((((..............))))))).--((......))))))))).))((((((......))))))----..))))).....- ( -25.74)
>DroAna_CAF1 98137 106 + 1
CCCACAACUCUGCUAACAUGGCUAUGACUGCUAUAAAAUGUCAUCUUUUAUUAUGGCAA-AGGCUCAACUGGCGCAGACUGCGCCUAGACUAAGGCACAAUCC-GA-AU------
........(((((....(((((.......)))))....((((((........)))))).-..(((.....)))))))).((.((((......)))).))....-..-..------ ( -23.50)
>DroPer_CAF1 101490 99 + 1
---------CUCUUAACAUGGCUAUGACUGCUAUAAAAUGUCAUCUUUUAUUAUGGCAAAAGGCUCAAAUGGCGCAGACUGCGCCUAGACUGAGACA-------GAGAUCCCAUA
---------((((....(((((.......)))))....((((((........))))))...(.((((...(((((.....))))).....)))).))-------)))........ ( -24.60)
>consensus
_________CUCCUAACAUGGCUAUGACUGCUAUAAAAUGUCAUCUUUUAUUAUGGCAA_AGGCUCAACUGGCGCAGACUGCGCCUAGACUGAGGCA_______GA_AU______
................(.((((((....((((((((..............))))))))............(((((.....)))))))).))).)..................... (-17.44 = -17.02 +  -0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:52 2006