Locus 4905

Sequence ID	2R_DroMel_CAF1
Location	16,027,457 – 16,027,550
Length	93
Max. P	0.800313

overview

Window 8

Location	16,027,457 – 16,027,550
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	85.70
Mean single sequence MFE	-23.14
Consensus MFE	-16.02
Energy contribution	-17.66
Covariance contribution	1.64
Combinations/Pair	1.05
Mean z-score	-2.17
Structure conservation index	0.69
SVM decision value	0.61
SVM RNA-class probability	0.800313
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16027457 93 + 20766785
GGCAAGGAAAAGGAUGAUCUCCUUCACAACGGCAGGUCAAACCAACAAUCUUGUCUCUGUUCCAGAGACUUUGGCCUCCGCCAAGAAAACUUU
(((...(..(((((.....)))))..)...((.((((((((...........(((((((...))))))))))))))))))))........... ( -28.50)
>DroSec_CAF1 82573 93 + 1
GGCAAGGAAAGGGAUGAUCUCCUUCACACCCUUAGGUCAAACCAACCAUCUUGUCUCUGUUCCAGAGACAUUGGCCUCAGCCCAGAAAACUUU
(((.(((.(((((.(((......)))..))))).((.....))..(((...((((((((...)))))))).))))))..)))........... ( -28.50)
>DroSim_CAF1 85815 85 + 1
GGCAAGGAAUAGGAUGAUCUCCUUCAAAC-CUUAGGUCAAC--CACCAUCUUGUC-CUGUACAAAAGACAUGGG-CUCCGCCCAAA--A-CUU
(((((((....((.((((((.........-...)))))).)--)....)))))))-..............((((-(...)))))..--.-... ( -20.40)
>DroEre_CAF1 88998 93 + 1
GGCAAGCAAAAGGAUGAUCUCCUUCACACCCUUAGGUCAAACCAAGCAUCUUGUCUCGGUUCCAGAGACAUUGGCCUCCGCCCAGAAAACUUU
(((......((((.(((......)))...))))(((((((...........((((((.......)))))))))))))..)))........... ( -22.20)
>DroYak_CAF1 92234 93 + 1
GGCAAUCAAAAGGAUGAUCUCCUUCACACCCUUAGGUCAAACCAACCAUCUUGUCCCUGUUCCAGAAACAUUGGCCUCCGCCCAGAAAACUUU
(((......((((.(((......)))...))))(((((((...........(((..(((...)))..))))))))))..)))........... ( -16.10)
>consensus
GGCAAGGAAAAGGAUGAUCUCCUUCACACCCUUAGGUCAAACCAACCAUCUUGUCUCUGUUCCAGAGACAUUGGCCUCCGCCCAGAAAACUUU
(((......(((((.....))))).........(((((((...........(((((((.....))))))))))))))..)))........... (-16.02 = -17.66 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:50 2006