Locus 4904

Sequence ID 2R_DroMel_CAF1
Location 16,022,725 – 16,022,823
Length 98
Max. P 0.978126
window7857

overview

Window 7

Location 16,022,725 – 16,022,823
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 75.76
Mean single sequence MFE -23.94
Consensus MFE -17.38
Energy contribution -18.74
Covariance contribution 1.36
Combinations/Pair 1.05
Mean z-score -1.97
Structure conservation index 0.73
SVM decision value 1.81
SVM RNA-class probability 0.978126
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16022725 98 + 20766785
UCAUUACUUUUACUUCCGAAUCGACUCCAAAUAUUUCUCUCAGUGUCGUUUUGCCGGCGUGUGUGUGCACACGCUGCAUAAAUGAUUUAUGGCCAACU
.......................................(((..((((((((((.((((((((....))))))))))).)))))))...)))...... ( -23.50)
>DroSec_CAF1 77875 81 + 1
GUAUCACUU-----------------CAAAAUGUUUCUCUCAGUGUCGUUUUGCCAGCGUGUGUGUGCACACGCUGCAUAAAUGAUUUAUGGCCAACU
.........-----------------.............(((..((((((((((.((((((((....))))))))))).)))))))...)))...... ( -24.20)
>DroSim_CAF1 81087 81 + 1
GUAUUACUU-----------------CUAAAUGUUUCUCUCAGUGUCGUUUUGCCAGCGUGUGUGUGCACACGCUGCAUAAAUGAUUUAUGGCCAACU
.........-----------------.............(((..((((((((((.((((((((....))))))))))).)))))))...)))...... ( -24.20)
>DroEre_CAF1 84202 93 + 1
----CACCU-UUUCUUCGAGUCAGCCCCAUAUAUUUUUCUCAGUGUCGGUUUGCCGUGCAGUGUGUGCACACGCUGCAUAAAUGAUUUAUGGGCAACU
----.....-.............((((.(((.(((............((....))((((((((((....))))))))))....))).))))))).... ( -26.70)
>DroYak_CAF1 87329 94 + 1
----UACAUCUUUCUUCGAGUCAGCCCUAUAUAUUUCUUUCAGUGUCGGUUUGAGGGCGAGUGUGUGCACACGCUGCAUAAAUGAUUUAUGGGCAACU
----........(((..(((((((((((........(.......)........))))).((((((....)))))).......))))))..)))..... ( -21.09)
>consensus
__AUUACUU_U___U_CGA_UC__C_CCAAAUAUUUCUCUCAGUGUCGUUUUGCCGGCGUGUGUGUGCACACGCUGCAUAAAUGAUUUAUGGCCAACU
.......................................(((..((((((((((.((((((((....))))))))))).)))))))...)))...... (-17.38 = -18.74 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:49 2006