| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,018,038 – 16,018,131 |
| Length | 93 |
| Max. P | 0.636564 |
| Location | 16,018,038 – 16,018,131 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 91.41 |
| Mean single sequence MFE | -22.60 |
| Consensus MFE | -19.51 |
| Energy contribution | -19.73 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.636564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16018038 93 + 20766785 UGCCGCUGCAGUUGUCGCUUCAUUUUUGCAACAAAAGUGUUGCAAAAUAUGUUGACAGGAAAUGUUAUGCGAAUUUCACUGCGUAUAAAAUGA .......(((((..((((..(((((((((((((....)))))))))).))).(((((.....))))).)))).....)))))........... ( -25.90) >DroVir_CAF1 173448 91 + 1 UGCUGCUGCA-UUGUCGCUUCAUUUUUGCUGCA-AAGUGUGGCAAAAUAUGUUGACAGGAAAUGUUAUGCGAAUUUCACUGCGUAUAAAAUGA (((....)))-((((((...(((((((((..(.-....)..)))))).))).))))))......(((((((..........)))))))..... ( -22.20) >DroGri_CAF1 177721 91 + 1 UGCUGCUGCA-UUGUCGCUUCAUUUUUGCAGCA-AAGUGUGGCAAAAUAUGUUGACAGGAAAUGUUAUGCGAAUUUCACUGCGUAUAAAAUGA ...(((..((-((...(((.((....)).))).-.))))..)))..(((((....((((((((.........))))).))))))))....... ( -20.60) >DroWil_CAF1 269966 92 + 1 UGCCCUUGCAGUUGUCGCUUCAUUUUUGCACCA-AAGUGUUGCAAAAUAUGUUGACAGGAAAUGUUAUGCGAAUUUCACUGCGUAUAAAAUGA .......(((((..((((..((((((((((.(.-....).))))))).))).(((((.....))))).)))).....)))))........... ( -21.10) >DroMoj_CAF1 195663 90 + 1 -ACUGCUGCA-UUGUCGCUUCAUUUUUGCAGCA-AAGUGUGGCAAAAUAUGUUGACAGGAAAUGUUAUGCGAAUUUCACUGCGUAUAAAAUGA -..(((..((-((...(((.((....)).))).-.))))..)))..(((((....((((((((.........))))).))))))))....... ( -20.60) >DroAna_CAF1 82509 87 + 1 UGCCGCUGCAGUUGUCGCUUCAUUUUUGCAGCAAUAGUGUUGCAAAAUAUGUUGACAGGAAAUGUUAUGUGAAUUUCACUGCGUACU------ .......((((((((((...(((((((((((((....)))))))))).))).))))).(((((.........)))))))))).....------ ( -25.20) >consensus UGCCGCUGCA_UUGUCGCUUCAUUUUUGCAGCA_AAGUGUGGCAAAAUAUGUUGACAGGAAAUGUUAUGCGAAUUUCACUGCGUAUAAAAUGA .......(((.((((((...(((((((((((((....)))))))))).))).))))))(((((.........)))))..)))........... (-19.51 = -19.73 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:48 2006