| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,003,867 – 16,003,970 |
| Length | 103 |
| Max. P | 0.679104 |
| Location | 16,003,867 – 16,003,970 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 78.40 |
| Mean single sequence MFE | -33.77 |
| Consensus MFE | -17.03 |
| Energy contribution | -18.08 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.679104 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16003867 103 + 20766785 GGAA-GAAAGGAAGAUGGA------------GAGUCACGGCCGCAGUGCAUGGAAAUUAAAUGGCGUGCCAUUUCCGUGUCGUGACUGUCAUUUCCGCUUCCUGUAUUUAUACAAA ((((-(...(((((...((------------.(((((((((.((...))((((((.....((((....))))))))))))))))))).)).))))).)))))((((....)))).. ( -39.30) >DroPse_CAF1 65986 110 + 1 AG------AGAGAGACCCAGCAGACCCGUCGCAGUCACGGCCGCAGUGCAUGGAAAUUAAAUGGCGUGCCAUUUCCGUGCCGUGACUGUUAUUUCCGUUUCCGGUAUUUAUACAAA ..------.(.(((((......((....))(((((((((((.((...))((((((.....((((....))))))))))))))))))))).......)))))).............. ( -33.30) >DroGri_CAF1 159017 100 + 1 AGGG--AAAG--AGACAGA----GAGAAAUGGAAUG--------GAUGCAUGGAAAUUAAAUGGCGUGCCAUUUCCGUGUCGUGACUGUCAUUUCCGCUUCCUGUAUUUAUACAAA ..((--(((.--.(((((.----..((.((((((((--------(((((..............)))).))).)))))).))....))))).)))))......((((....)))).. ( -27.44) >DroEre_CAF1 65453 102 + 1 GGAA--AGCGGAAGAUGGA------------GAGUCACGGCCGCAGUGCAUGGAAAUUAAAUGGCGUGCCAUUUCCGUGUCGUGACUGUCAUUUCCGCUUCCUGUAUUUAUACAAA ((((--.(((((((...((------------.(((((((((.((...))((((((.....((((....))))))))))))))))))).)).)))))))))))((((....)))).. ( -41.80) >DroAna_CAF1 67908 104 + 1 AGGCAGACAGAGAUAGGAA------------GAGUCACGGCCGCAGUGCAUGGAAAUUAAAUGGCGUGCCAUUUCCGUGUCGUGACUGUCAUUUCCGUUUCCUGUAUUUAUACAAA ......((((.((..((((------------((((((((((.((...))((((((.....((((....)))))))))))))))))))....)))))...))))))........... ( -31.80) >DroPer_CAF1 66448 114 + 1 AGAG--AGAGAGAGACCCAGCAGACGCGUCGCAGUCACGGCCGCAGUACAUGGAAAUUAAAUGGCGUGCCAUUUCCGUGCAGUGACUGUUAUUUCCGUUUCCGGUAUUUAUAAAAA .(((--(..(((((((...((....)))))((((((((.((....)).(((((((.....((((....)))))))))))..))))))))..))))..))))............... ( -29.00) >consensus AGAA__AAAGAGAGACGGA____________GAGUCACGGCCGCAGUGCAUGGAAAUUAAAUGGCGUGCCAUUUCCGUGUCGUGACUGUCAUUUCCGCUUCCUGUAUUUAUACAAA ................................(((((((........((((((((.....((((....)))))))))))))))))))............................. (-17.03 = -18.08 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:39 2006