| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,002,559 – 16,002,658 |
| Length | 99 |
| Max. P | 0.642994 |
| Location | 16,002,559 – 16,002,658 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 77.07 |
| Mean single sequence MFE | -21.73 |
| Consensus MFE | -12.69 |
| Energy contribution | -13.50 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.642994 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16002559 99 - 20766785 AAUUCCAUUCCAUUCCGUUCCAUGCCCCCGU--------UUUUCACCGCCUUGGCUUUUGUUUGCUUUAAUUAAAAGUUAAGUAGGUGCGAG-----CAACAAUGCCGGAAC ................(((((..........--------....((((..(((((((((((...........)))))))))))..)))).(.(-----((....))))))))) ( -23.40) >DroSim_CAF1 58842 84 - 1 AAUUCC---------------AUACCCCCGU--------UUUUCACCGCCUUGGCUUUUGUUUGCUUUAAUUAAAAGUUAAGUAGGUGCGAG-----CAACAAUGCCGGAAC ..((((---------------..........--------....((((..(((((((((((...........)))))))))))..)))).(.(-----((....)))))))). ( -21.20) >DroEre_CAF1 64134 99 - 1 AAUUCCAUUCCAUUUCAUACCAUACCCCCGU--------UUUUCACCGUCUUGGCUUUUGUUUGCUUUAAUUAAAAGUUAAGUAGGUGCGAG-----CAACAAUGCCGGAAC .......((((....................--------....((((..(((((((((((...........)))))))))))..)))).(.(-----((....)))))))). ( -20.50) >DroWil_CAF1 242191 86 - 1 ACU------------CACCCCACACCUCUCA--------UU-----UGCCUUGCCUUUUGUUUGCUUUAAUUAAAAGUUAAGUAGGUGCGAGCGCCUCAACAAUGCCAAAA- ...------------..........(((.((--------((-----(((.(((.((((((...........)))))).)))))))))).)))...................- ( -12.70) >DroYak_CAF1 66882 99 - 1 AAUUCCGUUCCAUUCCUUUACAUACCCCCGU--------UUUUCACCGCCUUGGCUUUUGUUUGCUUUAAUUAAAAGUUAAGUAGGUGCGAG-----CAACAAUGCCGGAAC ......(((((....................--------....((((..(((((((((((...........)))))))))))..)))).(.(-----((....))))))))) ( -23.40) >DroAna_CAF1 66671 95 - 1 -GGACCG-----------CCCCUGCCCCCGCUUUGCUUUUUUGCACCGCCUUGGCUUUUGUUUGCUUUAAUUAAAAGUUAAGUAGGUGCGAG-----CAACAAUGCCGGAAC -((....-----------..))....((.((.(((.((.((((((((..(((((((((((...........)))))))))))..))))))))-----.))))).)).))... ( -29.20) >consensus AAUUCC_________C_UCCCAUACCCCCGU________UUUUCACCGCCUUGGCUUUUGUUUGCUUUAAUUAAAAGUUAAGUAGGUGCGAG_____CAACAAUGCCGGAAC ..........................((.((........(((.((((..(((((((((((...........)))))))))))..)))).)))............)).))... (-12.69 = -13.50 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:38 2006