Locus 4892

Sequence ID 2R_DroMel_CAF1
Location 15,990,268 – 15,990,378
Length 110
Max. P 0.727579
window7843

overview

Window 3

Location 15,990,268 – 15,990,378
Length 110
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.02
Mean single sequence MFE -43.45
Consensus MFE -24.50
Energy contribution -26.89
Covariance contribution 2.39
Combinations/Pair 1.18
Mean z-score -2.60
Structure conservation index 0.56
SVM decision value 0.42
SVM RNA-class probability 0.727579
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15990268 110 + 20766785
GCCUGCCGCGAUGUUAACUAUCAGUAACAUGGCGAGGGGUAAGUGGG----------GGCGGUGGAACCGCAGAGUCCGCGAUGCCAGCAAUAUGCGUGGGAAACCACAUAUACAUAUUA
.(((..(((.((((((........)))))).))))))((((.(((((----------.((((.....))))....)))))..)))).((.....))((((....))))............ ( -41.50)
>DroSec_CAF1 45944 111 + 1
GCCUGCCGCGAUGUUAACUAUCAGUAACAUGGCGAGGGGUAGGUGGG---------CGGCGGUGGAACCGCAGAGUCCACGAUGCCUGCAAUAUGCGUGGGAAACCGCGUAUACAUAUUA
...((((((.((((((........)))))).)))..(((((.(((((---------(.((((.....))))...))))))..)))))))).(((((((((....)))))))))....... ( -52.60)
>DroSim_CAF1 46673 111 + 1
GCCUGCCGCGAUGUUAACUAUCAGUAACAUGGCGAGGGGUAGGUGGG---------GGGCGGUGGAACCGCAGAGUCCGCGAUGCCUGCAAUAUGCGUGGGAAACCGCGUAUACAUAUUA
.(((..(((.((((((........)))))).))).)))((((((.(.---------((((.(((....)))...)))).)...))))))..(((((((((....)))))))))....... ( -49.60)
>DroEre_CAF1 52219 110 + 1
GCCUGCCGCGAUGUUAACUAUCAGCAGCACGGCGAGGGGUAGGUGGG----------GGCGGUGCAACCGCAGAGUCCGCGACGCCUGCAAUAUGCGUGGUGAACCACAUAUACAUAUUA
.(((((((.(.((((.......)))).).)))).))).(((((((.(----------(((..(((....)))..))))....)))))))((((((.((((....)))).....)))))). ( -42.30)
>DroYak_CAF1 54569 120 + 1
GCCUGCCGCGAUGUUAACUAUCAGUAACACGGCGAGGGGUAAGUGGGGGGGACGGGGGGCGUUGGAACCGCAGAGUCCGCGAUGCCUGCAAUAUGCGUGGGAAACCACGUAUACAUAUUA
.(((((((...(((((........))))))))).)))((((.((((((....)(.((..(....)..)).)....)))))..)))).....(((((((((....)))))))))....... ( -45.00)
>DroAna_CAF1 46732 97 + 1
GCGGCCCGAGUUGUUAACUAUCAGGAACAACGCCUGGCG---------------------GGGGAAACCGCAGGAUCUGCCAUGCCUGCAAUAUGCACGGCA-ACCACACUUAUAUAU-A
..(((..((((((((..........)))))).((((.((---------------------(......))))))).)).))).(((((((.....))).))))-...............-. ( -29.70)
>consensus
GCCUGCCGCGAUGUUAACUAUCAGUAACAUGGCGAGGGGUAGGUGGG__________GGCGGUGGAACCGCAGAGUCCGCGAUGCCUGCAAUAUGCGUGGGAAACCACAUAUACAUAUUA
((((..(((.((((((........)))))).)))..))))..(((((...........((((.....))))....))))).......((.....))((((....))))............ (-24.50 = -26.89 +   2.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:36 2006