| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,978,739 – 15,978,856 |
| Length | 117 |
| Max. P | 0.529479 |
| Location | 15,978,739 – 15,978,856 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.30 |
| Mean single sequence MFE | -38.77 |
| Consensus MFE | -24.33 |
| Energy contribution | -22.94 |
| Covariance contribution | -1.38 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.529479 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15978739 117 + 20766785 AUUAUAUUGGACAGCAAGGGUGUGACCAUCGAGGAUCACACGCUGGGUCCUUACAACGAGGGCUCUGGGAUAAACAUCACGUGCGUGGCCAUCGGCGGUAAGUC-CUUACCAGUUUUC-- .....(((((......((.((((((((.....)).)))))).))((((((((.....)))))))).(((((..((..(((....)))(((...))).))..)))-))..)))))....-- ( -37.20) >DroGri_CAF1 127429 111 + 1 AUUAUACUGGACAGCAAGGGUGCCACCAUCAAGGACCAUACACUGGGACCCUACAAUGAAGGCUCCAGUGUGAACGUCACGUGCGUGGCCAUUGGCGGUAAGUU-CAUCC------UC-- .......(((((.((....(.((((((((....(((..((((((((..((..........))..))))))))...)))..))).))))))....)).....)))-))...------..-- ( -34.50) >DroWil_CAF1 199221 119 + 1 AUAAUAUUGGACAGCAAAGGUGCCACCAUCAAGGAUCAUACACUGGGUCCCUACAAUGAGGGUUCCACAGUGAACAUCACGUGCGUGGCCAUUGGCGGUAAGUU-GUCCUCCCUUUUCCC ........(((((((.....((((.(((....((.(((..((((((..((((......))))..)))..(((.....))))))..)))))..))).)))).)))-))))........... ( -40.20) >DroMoj_CAF1 128182 112 + 1 AUCAUACUGGACAGCAAGGGAGCCACCAUCAAGGAUCAUACGCUGGGGCCCUACAAUGAGGGCUCCAGUGUGAACGUCACGUGCGUGGCCAUUGGCGGUAAGUAACAGCC------AC-- ....((((..((.((....(.((((((((....(((..((((((((((((((......))))))))))))))...)))..))).))))))....)).)).))))......------..-- ( -45.90) >DroAna_CAF1 34997 116 + 1 AUUAUAUUGGACAGCAAGGGGGCCACCAUUAAGGAUCACACGCUGGGGCCCUACAACGAGGGUUCCGGCAUCAACAUCACGUGCGUGGCCAUUGGCGGUAAGUU-GUGACCCCUUUA--- ...............(((((((...((.....)).(((((((((((((((((......)))))))))))(((.....(((....)))(((...))))))..).)-))))))))))).--- ( -42.10) >DroPer_CAF1 39448 111 + 1 AUCAUUUUGGACAGCAAGGGGGCCACCAUCAAGGACCACACACUGGGGCCCUACAACGAGGGAUCCGCCAUUAACAUUACGUGCGUGGCCAUCGGCGGUAAGUC-CUU------UUUC-- ........((((......((((((.((.....)).(((.....)))))))))((..(((.((..(((((((.........))).)))))).)))...))..)))-)..------....-- ( -32.70) >consensus AUUAUAUUGGACAGCAAGGGUGCCACCAUCAAGGAUCACACACUGGGGCCCUACAACGAGGGCUCCAGCAUGAACAUCACGUGCGUGGCCAUUGGCGGUAAGUU_CUUCC____UUUC__ .........(((.((......)).(((..(((((.((((.((((((..((((......))))..))).............))).)))))).)))..)))..)))................ (-24.33 = -22.94 + -1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:31 2006