| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,974,997 – 15,975,088 |
| Length | 91 |
| Max. P | 0.682357 |
| Location | 15,974,997 – 15,975,088 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 75.11 |
| Mean single sequence MFE | -19.78 |
| Consensus MFE | -9.38 |
| Energy contribution | -9.60 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.682357 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15974997 91 - 20766785 ----UCGCCCUCUGUGUAUAAUUCCCUAGUUAUGCUAAUUUC-AGGCCUGCAG---C-CUGAUGGACGAACUCCCCAAAAACAGACACACACGCACACAC ----......((((((((((((......))))))).....((-((((.....)---)-)))).(((.....)))......)))))............... ( -19.10) >DroSec_CAF1 30792 94 - 1 CCAGCCGCCCUCUGUGUAUAAUUCCCUAGUUAUGCUAAUUUC-AGGCCUGCAG---C-CUGAUGGACGAACUCCCCA-AAACAGACACACACACACACAC ..........((((((((((((......))))))).....((-((((.....)---)-)))).(((.....)))...-..)))))............... ( -19.10) >DroSim_CAF1 30964 84 - 1 CCAGCCGCCCUCUGUGUAUAAUUCCCUAGUUAUGCUAAUUUC-AGGCCUGCAG---C-CUGAUGGACGAACUCCCUA-AAACAGACAC----------AC ..........((((((((((((......))))))).....((-((((.....)---)-)))).(((.....)))...-..)))))...----------.. ( -19.10) >DroEre_CAF1 37294 85 - 1 CCACCCGCCCUCUGUGUAUAAUUCACUAGUUAUGCUAAUUUC-AGGCCUGCAG---C-CUGAUGGACGAACUCCCCA-AAACAGACAGG-------AC-- ....((....((((((((((((......))))))).....((-((((.....)---)-)))).(((.....)))...-..)))))..))-------..-- ( -21.10) >DroYak_CAF1 38833 78 - 1 ---------AUCUGUGUAUAAUUCUCUAGUUAUGCUAAUUUC-AGGCCUGCAG---C-CUGAUGGACAAACUCCCCA-AAGCAGACACC-------AAAC ---------.((((((((((((......))))))).....((-((((.....)---)-)))).(((.....)))...-..)))))....-------.... ( -19.60) >DroPer_CAF1 35831 84 - 1 ----CCAGCCUCUCUGUAUAAUUUUCUAGUUAUGCUAAUUUCCAUGCCAGACGAUGCAUAGAUGGGCGAACAUUUCG-GGAAAGAGUGG----------- ----....((.((((((((((((....))))))))...(((((((((........))))(((((......))))).)-)))))))).))----------- ( -20.70) >consensus ____CCGCCCUCUGUGUAUAAUUCCCUAGUUAUGCUAAUUUC_AGGCCUGCAG___C_CUGAUGGACGAACUCCCCA_AAACAGACACA_______ACAC ..........((((((((((((......)))))))...........((..(((.....)))..))...............)))))............... ( -9.38 = -9.60 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:28 2006