Locus 4883

Sequence ID 2R_DroMel_CAF1
Location 15,967,696 – 15,967,790
Length 94
Max. P 0.881750
window7833

overview

Window 3

Location 15,967,696 – 15,967,790
Length 94
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 82.37
Mean single sequence MFE -34.15
Consensus MFE -21.21
Energy contribution -21.30
Covariance contribution 0.09
Combinations/Pair 1.19
Mean z-score -3.17
Structure conservation index 0.62
SVM decision value 0.92
SVM RNA-class probability 0.881750
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15967696 94 - 20766785
AUUGGAUAUCCAUCGACUGCAGUUGAU-------CGUAGACGGAUUCAAUGCAUACAAA-GC----UGCGGCGGCUGCGGAUUGAUGGAGCUUCAGGACAGAUUUU
.(((((..(((((((((((((((((.(-------(((((.(..................-))----)))))))))))))).))))))))..))))).......... ( -34.67)
>DroSec_CAF1 23517 93 - 1
AUUGGAUAUCCAUCGACUGCAGUUGAU-------CGUAGGUGGAUUCAAUGCAUACAAA-GC----UGA-GCGGCUGCGGAUUGAUGGAGCUUCUGGACAGAUUUU
.(..((..(((((((((((((((((.(-------(((..(((...........)))...-))----.))-.))))))))).))))))))...))..)......... ( -30.50)
>DroSim_CAF1 23737 93 - 1
AUUGGAUAUCCAUCGACUGCAGUUGAU-------CGUAGGUGGAUUCAAUGCAUACAAA-GC----UGA-ACGGCUGCGGAUUGAUGGAGCUUCGGGACAGAUUUU
.(((((..(((((((((((((((((.(-------(((..(((...........)))...-))----.))-.))))))))).))))))))..))))).......... ( -29.00)
>DroEre_CAF1 30037 92 - 1
AUUGGAUAUCCAUCGACUGCAGUUGAU-------CGUAGGUGGCUUCAAUGCAUACAAA-GC----UGG-UCGGCUGCGGAUUGAUGGAGCUUCAGGACAGAUUU-
.(((((..(((((((((((((((((((-------(((..(((((......)).)))...-))----.))-)))))))))).))))))))..))))).........- ( -37.80)
>DroYak_CAF1 31211 96 - 1
AUUGGAUAUCCAUCGACUGCAGUUGAU-------CGUAGGUGGAUUCAAUGCAUACAAAAGC-UGGUGG-UCGGCUGCGGAUUGAUGGAGCUUCAGGACAGAUUU-
.(((((..(((((((((((((((((((-------((..(((...................))-)..)))-)))))))))).))))))))..))))).........- ( -35.61)
>DroAna_CAF1 23377 101 - 1
AUUGGACUCCCAACGACUGCACUUUAUGGUAGCUUGUAGGUGGAU--GAUGCCACCUAA-CCGUAUAGA-GCAGCUGUGGAUUGUUUGAAAUUCCGCAAGGAUUU-
.(..(((..(((.((.((((.((.((((((......(((((((..--....))))))))-))))).)).-)))).)))))...)))..)...(((....)))...- ( -37.30)
>consensus
AUUGGAUAUCCAUCGACUGCAGUUGAU_______CGUAGGUGGAUUCAAUGCAUACAAA_GC____UGA_GCGGCUGCGGAUUGAUGGAGCUUCAGGACAGAUUU_
.(((((..(((((((((((((((((..........(((...........)))...((.........))...))))))))).))))))))..))))).......... (-21.21 = -21.30 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:26 2006