Locus 4865

Sequence ID	2R_DroMel_CAF1
Location	15,927,931 – 15,928,045
Length	114
Max. P	0.595718

overview

Window 9

Location	15,927,931 – 15,928,045
Length	114
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	76.90
Mean single sequence MFE	-31.34
Consensus MFE	-22.88
Energy contribution	-23.00
Covariance contribution	0.12
Combinations/Pair	1.08
Mean z-score	-1.47
Structure conservation index	0.73
SVM decision value	0.13
SVM RNA-class probability	0.595718
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15927931 114 - 20766785
GUGCGUCCAGCACUUUCUAUUGACAGGGGACGUGGCCGUUUGGAAGGAAUGCUGUGGCAUUCUCCACUGAAAAAAAAUAUUUAAGCCCCUAAGUACUACCGAUAAGCAUGCACU
((((((((....((.((....)).)).))))...((...((((.((((((((....))))))...............((((((......)))))))).))))...))..)))). ( -29.50)
>DroSim_CAF1 54130 105 - 1
GUGCGUCCAGCACUUUCUAUUGACAGGGGACGUGGCCGUUUGGAAGGAGUGCUGUGGCAUUCGGCACUGAAAA-AAAUAUUCAA--------GAACUACCUAUAAGCAUGCACU
((((((((....((.((....)).)).))))......(((((..((((((((((.......)))))))(((..-.....)))..--------......))).)))))..)))). ( -29.80)
>DroEre_CAF1 55045 96 - 1
GUGCGUCCAGCACUUUCUAUUGACAGGGGACGUGGCCGCUUGGAAAGAGUGGUGUGGCAUUCUACACUGGAA--ACAUACAUGAGCC-A---AAAGU------------GCACA
((((((((....((.((....)).)).)))).(((((((((.....)))))((((((....))))))((...--.)).......)))-)---.....------------)))). ( -31.70)
>DroYak_CAF1 57390 98 - 1
GUGCGUCCAGCACUUUCUAUUGACAGGGGACGUGGUCCUUUGGAAAGAGUGCUGUGGCAUGCUGCACCGAAAA-AAAUACAUGAGCA-A---AAAGUA-----------GCACG
(((((((((((((((....((..((((((((...))))))))..)))))))))).))).((((.((.......-.......))))))-.---......-----------)))). ( -34.34)
>consensus
GUGCGUCCAGCACUUUCUAUUGACAGGGGACGUGGCCGUUUGGAAAGAGUGCUGUGGCAUUCUGCACUGAAAA_AAAUACAUAAGCC_A___AAACUA___________GCACU
(((((((((((((((((((....(((....).))......)))))))..))))).))).(((......)))......................................)))). (-22.88 = -23.00 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:04 2006