Locus 4863

Sequence ID 2R_DroMel_CAF1
Location 15,925,596 – 15,925,694
Length 98
Max. P 0.792787
window7807

overview

Window 7

Location 15,925,596 – 15,925,694
Length 98
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 79.25
Mean single sequence MFE -23.23
Consensus MFE -18.07
Energy contribution -18.07
Covariance contribution 0.00
Combinations/Pair 1.08
Mean z-score -1.37
Structure conservation index 0.78
SVM decision value 0.59
SVM RNA-class probability 0.792787
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15925596 98 + 20766785
ACAU-----CCUGCCCACUGCACCCUUUUUUCCCACCGCCCCUGUGUCGCCUGUUGUCAUUGAGCAUAAUACCGUUAUCUUUCUGUGACAGCAGCGA-UGUCGC-
....-----..(((.....))).....................(..((((.(((((((((.(((.(((((...))))))))...)))))))))))))-..)...- ( -22.40)
>DroPse_CAF1 54901 94 + 1
UC-UCAUAUUCUCCCUCUUAUACUCUU---------UGGGGCUGUGGCU-GUGUUGUCAUUGAGCAUAAUACCGUUAUCUCUGUGUGACAGCAGCGUUUGUCGCA
..-(((((...((((............---------.)))).)))))..-.(((((((((.(((.(((((...))))))))...)))))))))(((.....))). ( -24.42)
>DroSim_CAF1 51339 98 + 1
ACAU-----CCUGCCCACUGCACCCUUUUUUCCCACCGCCCCUGUGUCGCCUGUUGUCAUUGAGCAUAAUACCGUUAUCUUUCUGUGACAGCAGCGA-UGUCGC-
....-----..(((.....))).....................(..((((.(((((((((.(((.(((((...))))))))...)))))))))))))-..)...- ( -22.40)
>DroEre_CAF1 52706 103 + 1
UCAUCACAUUCUGGCCACUGCACCCUUUUUUCCCACCGCCCCUGUGUCGACUGUUGUCAUUGAGCAUAAUACCGUUAUCUUUCUGUGACAGCAGCGA-UGUCGC-
.((((((((...(((......................)))...)))).(.((((((((((.(((.(((((...))))))))...)))))))))))))-))....- ( -24.45)
>DroYak_CAF1 54905 103 + 1
ACAUCCUGUCCUGUCCACUGCACCCUUUUUUCCCACCGCCCCUGUGUCGACUGUUGUCAUUGAGCAUAAUACCGUUAUCUUUCUGUGACAGCAGCGA-UGUCGC-
...........................................(..(((.((((((((((.(((.(((((...))))))))...)))))))))))))-..)...- ( -21.60)
>DroPer_CAF1 55063 94 + 1
UC-UCAUGUUCUCCCUCUUAUACUCUU---------UGGGGCUGUGGCU-GUGUUGUCAUUGAGCAUAAUACCGUUAUCUCUGUGUGACAGCAGCGUUUGUCGCA
..-........((((............---------.))))..((((((-((((((((((.(((.(((((...))))))))...))))))))).))...))))). ( -24.12)
>consensus
ACAUCAU_UCCUGCCCACUGCACCCUUUUUUCCCACCGCCCCUGUGUCG_CUGUUGUCAUUGAGCAUAAUACCGUUAUCUUUCUGUGACAGCAGCGA_UGUCGC_
...........................................((((((.((((((((((.(((.(((((...))))))))...)))))))))))))....))). (-18.07 = -18.07 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:02 2006