Locus 4861

Sequence ID 2R_DroMel_CAF1
Location 15,922,528 – 15,922,628
Length 100
Max. P 0.985712
window7804

overview

Window 4

Location 15,922,528 – 15,922,628
Length 100
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 93.68
Mean single sequence MFE -34.10
Consensus MFE -30.67
Energy contribution -31.17
Covariance contribution 0.50
Combinations/Pair 1.07
Mean z-score -2.02
Structure conservation index 0.90
SVM decision value 2.02
SVM RNA-class probability 0.985712
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15922528 100 + 20766785
CGUCAGCGGACAAAAGUGGCCAGGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGUUGCCUUUGCGCUUCCGUUUCUUGCAG-------CACGUCCAA
.......((((....(((....(((((((((((.((((.(((((((........))))))).))..)).)))))))))))((.....))..-------))))))).. ( -35.50)
>DroSec_CAF1 50257 100 + 1
CGUCAGCGGGCAAAAGUGGCCAGGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGUUGCCUUUGCGCUUCCGUUUCUUGCAG-------CACGUCCAA
((((.((((.((....)).)).(((((((((((.((((.(((((((........))))))).))..)).))))))))))).......)).)-------.)))..... ( -35.70)
>DroSim_CAF1 48360 100 + 1
CGUCAGCGGGCAAAAGUGGCCAGGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGUUGCCUUUGCGCUUCCGUUUCUUGCAG-------CACGUCCAA
((((.((((.((....)).)).(((((((((((.((((.(((((((........))))))).))..)).))))))))))).......)).)-------.)))..... ( -35.70)
>DroEre_CAF1 49696 100 + 1
UGUCAGCAGGCAAAAGUGGCCAGGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGUUGCCUUUGCGCUUCCGUUUCUUGCAG-------CACGUCCAA
.....((((((.......))).(((((((((((.((((.(((((((........))))))).))..)).)))))))))))......)))..-------......... ( -35.70)
>DroYak_CAF1 51798 107 + 1
UGUCAGCAGGCAAAAGUGGCCAGGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGUUGCCUUUGCGCUUCCGUUUCUUGCAGCACGCAGCACGUCCAA
.....((((((.......))).(((((((((((.((((.(((((((........))))))).))..)).)))))))))))......))).((.....))........ ( -36.90)
>DroAna_CAF1 43060 100 + 1
UGUCAGCGGGCAAAAGUGGUCAGGAAGUGCAAGUGCCAACGGAAAGUUUUAAUUGUUUCUGCUUUUGCCUUUCAGCUUCCGUUUCUUGCUG-------CAUGGCCAA
.(((((((((((((((..(.(((...(.((....)))(((.....)))....)))...)..)))))))))...(((...........))))-------).))))... ( -25.10)
>consensus
CGUCAGCGGGCAAAAGUGGCCAGGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGUUGCCUUUGCGCUUCCGUUUCUUGCAG_______CACGUCCAA
.....((((((.......))).(((((((((((.((((.(((((((........))))))).))..)).)))))))))))......))).................. (-30.67 = -31.17 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:59 2006