Locus 486

Sequence ID 2R_DroMel_CAF1
Location 2,700,034 – 2,700,127
Length 93
Max. P 0.920991
window921

overview

Window 1

Location 2,700,034 – 2,700,127
Length 93
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 82.52
Mean single sequence MFE -27.58
Consensus MFE -19.18
Energy contribution -19.94
Covariance contribution 0.76
Combinations/Pair 1.04
Mean z-score -2.26
Structure conservation index 0.70
SVM decision value 1.14
SVM RNA-class probability 0.920991
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2700034 93 - 20766785
GUUUCAUUACACUUCUGUGGGUGGCAGCUGCUUUGGAUCACCAGAUCCGUAGAUCCUCAGCUU----UAUCUGCACUAUGGCCCACCAAAAACUAAU
((((.....(((....)))(((((..(((.....(((((....)))))((((((.........----.)))))).....))))))))..)))).... ( -25.50)
>DroSec_CAF1 14949 93 - 1
GUUUCAUUACACUUCUGUGGGUGGCAGCUGCUGCGGAUCCUCGGACCCAUAGAUCCUCAGCUC----AAUCUGCACUGUGGCCCACCGAAAACUAAU
............(((.((((((.((((..((((.(((((...(....)...))))).))))..----........)))).)))))).)))....... ( -30.90)
>DroSim_CAF1 12352 93 - 1
GUUUCAUUACACUUCUGUGGGUGGCAGCUGCCUCGGAUCCUCAGAUCCAUAGAUCCUCAGCUC----CAUCUGCACUGUGGCCCACCGAAAACUAAU
............(((.((((((.((((.(((...(((((....)))))..((((.........----.))))))))))).)))))).)))....... ( -30.10)
>DroEre_CAF1 12380 84 - 1
GUUUCAUUACACUUCUGUGGGUGGCAGCUGCCAUGGAUGCCCGA--------GUCCUCAGCUA----UAUCGGC-CUAUGGCCCACCGAAAACUAAU
.((((....(((....)))((((..(((((....((((......--------)))).))))).----....(((-(...))))))))))))...... ( -26.40)
>DroYak_CAF1 12034 89 - 1
GUUUCAUUGCACUUCUGUGGGUGGCAGCUGCUUCGAUUGCCCAG--------GUCCUCAGCUACAUAUAUCUGCACUGUGGCCCACCGAAAACUAAU
............(((.((((((.((((.(((...(((......(--------((.....)))......))).))))))).)))))).)))....... ( -25.00)
>consensus
GUUUCAUUACACUUCUGUGGGUGGCAGCUGCUUCGGAUCCCCAGA_CC_UAGAUCCUCAGCUA____UAUCUGCACUGUGGCCCACCGAAAACUAAU
.((((....(((....)))(((((.(((((....(((((............))))).)))))..........((......)))))))))))...... (-19.18 = -19.94 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:50 2006