| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,916,324 – 15,916,414 |
| Length | 90 |
| Max. P | 0.938067 |
| Location | 15,916,324 – 15,916,414 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 75.61 |
| Mean single sequence MFE | -28.38 |
| Consensus MFE | -12.80 |
| Energy contribution | -12.88 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.45 |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.938067 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15916324 90 + 20766785 AAGCUUCAUGG-----------CUCCAUGUGCAUUGUUCAUUUCGCUUGCUUUGCGA---AAUUAAUGGCUAGUCAAAUGUGGGUUAACCGCCUGGCAUACAAC------ ..((..((((.-----------...)))).))...(((.(((((((.......))))---))).))).(((((......((((.....))))))))).......------ ( -24.80) >DroSec_CAF1 44077 90 + 1 GAGCUCCAUGG-----------CUCCAUGUGCAUUGUUCAUUUCGCUUGCUUUGCGA---AAUGAAUGGCCAGUCAAAUGUGGGUUAACCGCCUGGCAUACAAC------ (((((....))-----------)))..((((....(((((((((((.......))))---))))))).(((((......((((.....))))))))).))))..------ ( -33.40) >DroSim_CAF1 41508 90 + 1 GAGCUCCAUGG-----------CUCCAUGUGCAUUGUUCAUUUCGCUUGCUUUGCGA---AAUUAAUGGCCAGUCAAAUGUGGGUUAACCGCCUGGCAUACAAC------ (((((....))-----------)))..(((((((((...(((((((.......))))---))))))))(((((......((((.....))))))))).))))..------ ( -28.60) >DroYak_CAF1 45483 95 + 1 CAGCUGC-CGG-----------CUUCAUGUGCAUUGUUCAUUUCGCUUGCUCUGCGA---AAUUAAUGGACAGUCAAAUGUGGGUUAACCGCCUGGCAUACUACACAAGC ....(((-(((-----------(..(((.((.((((((((((((((.......))))---....)))))))))))).))).((.....))))).))))............ ( -28.80) >DroAna_CAF1 37251 96 + 1 CCGG-UCAUGGCCAGCUGCCAUCUUCACAUGCAUUGUUCAUUUCGUUUGUUUUUGGCCAUUAUUAAUGUGAAGUCAAAUUUAGGUUAACUGGCGGCG------------- ..((-(....))).((((((..((((((((....((..((.............))..))......))))))))........((.....)))))))).------------- ( -26.32) >consensus CAGCUCCAUGG___________CUCCAUGUGCAUUGUUCAUUUCGCUUGCUUUGCGA___AAUUAAUGGCCAGUCAAAUGUGGGUUAACCGCCUGGCAUACAAC______ ...............................(((((......((((.......))))......)))))(((((......((((.....)))))))))............. (-12.80 = -12.88 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:53 2006