Locus 4850

Sequence ID 2R_DroMel_CAF1
Location 15,907,186 – 15,907,292
Length 106
Max. P 0.625990
window7789

overview

Window 9

Location 15,907,186 – 15,907,292
Length 106
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 95.71
Mean single sequence MFE -21.07
Consensus MFE -19.28
Energy contribution -19.44
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.06
Structure conservation index 0.91
SVM decision value 0.19
SVM RNA-class probability 0.625990
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15907186 106 - 20766785
AUAACAGCUAUUUGAUUUUAUUUAUUUUGUUUUC-------AU-AUUUUCUGCGAAUAAGUUGGCCGCUUUGUGGCACACCAGCAAAUUAAGUUAAUAAUAAAACAGUUGCUGG
....((((((((((........(((.........-------))-).......))))).)))))(((((...)))))...(((((((.....(((........)))..))))))) ( -20.76)
>DroSec_CAF1 35031 106 - 1
AUAACAGCUAUUUGAUUUUAUUUAUUUUGUUUUC-------AU-AUUUUCUGCGAAUAAGUUGGCCGCUUUGUGGCACACCAACAAAUUAAGUUAAUAAUAAAACAGUUGCUGG
....((((...(((.(((((((....((((((.(-------(.-......)).))))))(((((..(((....)))...))))).............))))))))))..)))). ( -20.30)
>DroSim_CAF1 32487 106 - 1
AUAACAGCUAUUUGAUUUUAUUUAUUUUGUUUUC-------AU-AUUUUCUGCGAAUAAGUUGGCCGCUUUGUGGCACACCAGCAAAUUAAGUUAAUAAUAAAACAGUUGCUGG
....((((((((((........(((.........-------))-).......))))).)))))(((((...)))))...(((((((.....(((........)))..))))))) ( -20.76)
>DroEre_CAF1 33056 106 - 1
AUAACAGCUAUUUGAUUUUAUUUAUUUUGUUUUC-------AU-AUUUUCUGCGAAUAAGUUGGCCGCUUUGUGGCACACCAGCAAAUUAAGUUAAUAAUAAAACAGUUGCUGG
....((((((((((........(((.........-------))-).......))))).)))))(((((...)))))...(((((((.....(((........)))..))))))) ( -20.76)
>DroYak_CAF1 36097 106 - 1
AUAACAGCUAUUUGAUUUUAUUUAUUUUGUUUUC-------AU-AUUUUCUGCGAAUAAGUUGGCCGCUUUGUGGCACACCAGCAAAUUAAGUUAAUAAUAAAACAGUUGCUGG
....((((((((((........(((.........-------))-).......))))).)))))(((((...)))))...(((((((.....(((........)))..))))))) ( -20.76)
>DroAna_CAF1 28597 114 - 1
AUAACAGCUAUUUGAUUUUAUUUAUUUCAUUUUUUUUAUGCAUUUUUUUUUGCGAAUAAGUUGGCCGCUUUGUGGCACACCAGCAAAUUAAGUUAAUAAUAAAACAGUUGCUGG
....(((((...(((..(.....)..))).........((((........))))....)))))(((((...)))))...(((((((.....(((........)))..))))))) ( -23.10)
>consensus
AUAACAGCUAUUUGAUUUUAUUUAUUUUGUUUUC_______AU_AUUUUCUGCGAAUAAGUUGGCCGCUUUGUGGCACACCAGCAAAUUAAGUUAAUAAUAAAACAGUUGCUGG
....((((((((((......................................))))).)))))(((((...)))))...(((((((.....(((........)))..))))))) (-19.28 = -19.44 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:45 2006