Locus 4848

Sequence ID 2R_DroMel_CAF1
Location 15,905,322 – 15,905,430
Length 108
Max. P 0.595157
window7787

overview

Window 7

Location 15,905,322 – 15,905,430
Length 108
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 72.59
Mean single sequence MFE -14.77
Consensus MFE -11.48
Energy contribution -11.24
Covariance contribution -0.24
Combinations/Pair 1.06
Mean z-score -0.44
Structure conservation index 0.78
SVM decision value 0.12
SVM RNA-class probability 0.595157
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15905322 108 - 20766785
UAUGUCCCCG--GCGCAGAGGUGAUAAAUUACCAUCGGCCAAGGUGUCAUAUUAAAACCAA--GCAGCACACACACUCCCACACCCA--------CACGCGCACACACUACCCCCCACAC
..........--((((.(((((((....))))).))......(((((..............--.................)))))..--------...)))).................. ( -16.58)
>DroPse_CAF1 32066 100 - 1
UAUGUCCCCGUAGCGUAGAGGUGAUAAAUUACCAUCGGCCAAGGUGUCAUAUUAAAACCAA--AACACUCACACUCUCCCCUCCUCGCCCCUUUUCA------------------UGCUC
((((.....(..(((..((((((((........)))).....(((...........)))..--................))))..)))..)....))------------------))... ( -14.40)
>DroEre_CAF1 31164 98 - 1
UAUGUCCCCG--GCGCAGAGGUGAUAAAUUACCAUCGGCCAAGGUGUCAUAUUAAAACCAA--GCAGCACACACACCACCACACCCACCCACACCCA------------------CACAC
.........(--((...(((((((....))))).)).)))..(((((..............--.........)))))....................------------------..... ( -14.70)
>DroAna_CAF1 26607 97 - 1
UAUGUCCCCA--AAGCAGAGGUGAUAAAUUACCAUCGGCCAAGGUGUCAUAUUAAAACCAGCGUCAGAACACACAC--ACACACCCA--------GAC--------AC-ACC--CCGCUC
..((((....--..((.(((((((....))))).)).))...(((((.............................--..)))))..--------)))--------).-...--...... ( -13.78)
>DroPer_CAF1 32162 100 - 1
UAUGUCCCCGUAGCGUAGAGGUGAUAAAUUACCAUCGGCCAAGGUGUCAUAUUAAAACCAA--AACACUCACACUCUCCCCUCCUCGCCCCUUUUCA------------------UGCUC
((((.....(..(((..((((((((........)))).....(((...........)))..--................))))..)))..)....))------------------))... ( -14.40)
>consensus
UAUGUCCCCG__GCGCAGAGGUGAUAAAUUACCAUCGGCCAAGGUGUCAUAUUAAAACCAA__ACAGCACACACACUCCCACACCCACCC_____CA__________________CGCUC
((((.(.((.....((.(((((((....))))).)).))...)).).))))..................................................................... (-11.48 = -11.24 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:43 2006