| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,852,826 – 15,852,917 |
| Length | 91 |
| Max. P | 0.936681 |
| Location | 15,852,826 – 15,852,917 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.59 |
| Mean single sequence MFE | -34.46 |
| Consensus MFE | -25.04 |
| Energy contribution | -25.15 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.936681 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15852826 91 - 20766785 -------AGUCGGGGGCACACUGGGUGCCAUAAAUUAUGCAGCGCGCGGUAGAUGCUGCAAUCUGAUGCCCUUCUGGCUCCCCUUCACU-------CCA---------------ACCCCA -------....((((.......(((.((((.......((((((((......).)))))))....((......)))))).))).......-------...---------------.)))). ( -29.07) >DroSec_CAF1 10233 91 - 1 -------AGUCGGGGGCACACUGGGUGCCAUAAAUUAUGCAGCGCGCGGUAGAUGCUGCAAUCUGAUGCCCUUCUGGCCCCCCUUCGCU-------CCA---------------ACCCCA -------....((((((.((..(((.((.((......((((((((......).))))))).....)))))))..)))))))).......-------...---------------...... ( -32.00) >DroEre_CAF1 11626 91 - 1 -------AGUCGGGGGCACACUGGGUGCCAUAAAUUAUGCAGCGCGCGGUAGAAGCUGCAAUCUGAUGCCCUUCUGGCUCCCAUUCGCU-------GCU---------------CCCCCA -------....((((((((..((((.((((.......((((((...(....)..))))))....((......)))))).))))...).)-------)))---------------)))... ( -35.10) >DroYak_CAF1 11339 111 - 1 AGUCGGUAGUCGGGGGCACACUGGGUGCCAUAAAUUAUGCAGCGCGCGGUAGAAGCUGCAAUCUGAUGCCCUUCUGGCUCCCAUUCGCU-------GCUUCCA-G-UCCCCUUUCCUCCU ....((..(..((((((..((((.((((((((...))))..)))).)))).(((((.(((((..((.(((.....)))))..))).)).-------)))))..-)-)))))...)..)). ( -38.90) >DroAna_CAF1 11644 88 - 1 -------AGUCGGGGUC--GCCGGGCGCCAUAAAUUAUGCAGCGCGCGGUAGAAGCUGCAAUCUGAUGCCCUUCUGUCCUUCGUGCG---------GCUCCGC-A---------UC---- -------.(.(((((((--(((((((((((((...))))..))))..((((((((..(((......))).)))))).)).))).)))---------)))))))-.---------..---- ( -36.50) >DroPer_CAF1 17749 101 - 1 -------GGGCGAGGG---AUUGGGCCCCAUAAAUUAUGCAGCACGCGGUGGUUGCUGCAAUCUGAUGCCCUUCUGGCCCC-AUUCCCCAGAACACGCUUCCACCG--------CCUCCA -------(((((..((---(..((((..((.......(((((((.((....)))))))))...))..))))((((((....-.....))))))......)))..))--------)))... ( -35.20) >consensus _______AGUCGGGGGCACACUGGGUGCCAUAAAUUAUGCAGCGCGCGGUAGAAGCUGCAAUCUGAUGCCCUUCUGGCCCCCAUUCGCU_______GCU_______________CCCCCA ...........((((((.....((((..((.......((((((...(....)..))))))...))..)))).....))))))...................................... (-25.04 = -25.15 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:13 2006