Locus 4824

Sequence ID 2R_DroMel_CAF1
Location 15,840,599 – 15,840,692
Length 93
Max. P 0.730405
window7746

overview

Window 6

Location 15,840,599 – 15,840,692
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 87.21
Mean single sequence MFE -31.52
Consensus MFE -25.74
Energy contribution -25.38
Covariance contribution -0.36
Combinations/Pair 1.21
Mean z-score -2.14
Structure conservation index 0.82
SVM decision value 0.42
SVM RNA-class probability 0.730405
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15840599 93 - 20766785
CUCCGACUCAGACUUCUUAUGUUGCUGGCUGUGCGUGCUUCUCAUUGAUGAGAAUCUCGUGCAGCUUAAUAUCUUUCGGCGUGGAGGUGUCCA
....(((....((((((.((((((..(((((..((.(.((((((....)))))).).))..)))))..........))))))))))))))).. ( -30.50)
>DroPse_CAF1 565 90 - 1
CUUCGAUUCAGAC---CUUCGGCUCUGGCUGCGCGUGCUUCUCGUUGAUGAGAAUCUCGUGCAGCUUUAUGUCCUGCGGCGUGGAGGUGUCGA
..(((((.((((.---(....).))))((((((((.(.((((((....)))))).).))))))))((((((((....))))))))...))))) ( -36.10)
>DroEre_CAF1 563 93 - 1
CUCCGACUCAGACUUCCUUUGUUUCUGGCUGUGCGUGCUUCUCAUUGAUGAGAAUCUCGUGCAGCUUAAUAUCUUUCGGCGUGGAAGUAUCAA
...........((((((..((((...(((((..((.(.((((((....)))))).).))..)))))...........)))).))))))..... ( -28.14)
>DroYak_CAF1 563 93 - 1
CUCCGACUCAGACUUCCUUUGUUUCUGGCUGUGCGUGCUUCUCGUUGAUGAGAAUCUCGUGCAGCUUAAUAUCUUUCGGCGUGGAGGUAUCCA
(.((((..((((...........))))((((..((.(.((((((....)))))).).))..))))..........)))).)((((....)))) ( -28.10)
>DroAna_CAF1 567 93 - 1
UUCCAAUUCAGACUUCCUUCGUUUCUGGCUGGGCGUGCUUCUCGUUUAUGAGAAUCUCGUGCAGCUUAAUAUCCUGCGGUGUGGAGGUGUCGA
..........(((..(((((......(((((.(((.(.((((((....)))))).).))).)))))..(((((....)))))))))).))).. ( -30.20)
>DroPer_CAF1 565 90 - 1
CUUCGAUUCAGAC---CUUCGGCUCUGGCUGCGCGUGCUUCUCGUUGAUGAGAAUCUCGUGCAGCUUUAUGUCCUGCGGCGUGGAGGUGUCGA
..(((((.((((.---(....).))))((((((((.(.((((((....)))))).).))))))))((((((((....))))))))...))))) ( -36.10)
>consensus
CUCCGACUCAGACUUCCUUCGUUUCUGGCUGUGCGUGCUUCUCGUUGAUGAGAAUCUCGUGCAGCUUAAUAUCCUGCGGCGUGGAGGUGUCGA
(((((...((((...........))))((((((((.(.((((((....)))))).).))))))))................)))))....... (-25.74 = -25.38 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:05 2006