| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,804,138 – 15,804,255 |
| Length | 117 |
| Max. P | 0.813440 |
| Location | 15,804,138 – 15,804,255 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.11 |
| Mean single sequence MFE | -54.92 |
| Consensus MFE | -31.20 |
| Energy contribution | -31.43 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.813440 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15804138 117 + 20766785 UGGGGAGGAGCGAUGGGGGCGCCAUAGCUGUUGCUGGGCGC---UCCUCCAUUGCCACCGGCCCGCUGGGGUGGCAAGUAGUUGCUCGACGGCGACUGGUAGCCCUGCGUGGGCGGCAGG ..((...(.((((((((((((((.((((....)))))))))---.)).)))))))).)).((((((.(.((.(((.(.((((((((....)))))))).).))))).)))))))...... ( -63.40) >DroVir_CAF1 2110 114 + 1 UGGGGCA------GGGGCGCGCCGUAGCUGUUGCUGGGCGCCGCGCCACCAGCCUGGCCGCCACGCUGGGGAGGCAAGUAGUUGUUGGCGGGCGACUGAUAGCUCUGUGUGGGCGGCAGA ..((((.------((((((((((.((((....)))).).).)))))).)).)))).((((((.(((.(.((((.(...(((((((......)))))))...))))).))))))))))... ( -58.20) >DroGri_CAF1 2828 114 + 1 UGGGGCA------CUGGAGCACCAUAGCUGUUGCUGGGUGAAGAGCCACCACCAUUGCCGCCACGCUGAGGAGGCAAAUAAUUGUUGGCCGGCGAUUGGUAGCUUUGGGUGGGUGGCAGA ((((((.------((....((((.((((....)))))))).)).))).)))...((((((((.((((...(((((...((((((((....))))))))...))))).)))))))))))). ( -49.00) >DroWil_CAF1 1255 117 + 1 UGGGG---GGCAAUGGGGGCACCGUAGCUGUUGCUUGGAGCACCUCCUCCAUUUCCACCCGAACGCUGAGGAGGCAAAUAGUUGUUCGAUGGCGACUGAUAGCUCUGUGUGGGUGGCAAA (((((---(.....(((.((.(((.(((....)))))).)).)))))))))...((((((..((((...((((.(...(((((((......)))))))...))))))))))))))).... ( -43.00) >DroYak_CAF1 1579 117 + 1 UGGGGAGGGGCGAUGGGGGCGCCGUAGCUGUUGCUGGGCGC---UCCACCAUUGCCGCCGGUCCGCUGGGGAGGCAAGUAGUUGUUCGACGGCGACUGGAAGCCCUGCGUGGGCGGCAGG ........(((((((((((((((.((((....)))))))))---.)).))))))))((((.(((((.(.((.(((...(((((((......)))))))...))))).))))))))))... ( -63.00) >DroAna_CAF1 2150 117 + 1 UGAGGAGGAGCAAUAGGUGCUCCGUAGCUGUUGCUGGGCGC---UCCACCAUUGCCUCCGGUACGCUGGGGCGGCAGGUAGUUGUUCGAGGGCGACUGGAAGCCCUGAGUGGGCGGCAGA ......((((((.....))))))....((((((((((((..---((((((.(((((.((((....)))))))))..)))(((((((....)))))))))).))))......)))))))). ( -52.90) >consensus UGGGGAG__GC_AUGGGGGCGCCGUAGCUGUUGCUGGGCGC___UCCACCAUUGCCGCCGGCACGCUGGGGAGGCAAGUAGUUGUUCGACGGCGACUGGUAGCCCUGCGUGGGCGGCAGA ((((((............(((((.((((....)))))))))...))).)))...(((((..(((((...((.(((...((((((((....))))))))...))))))))))))))).... (-31.20 = -31.43 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:53 2006