Locus 4815

Sequence ID 2R_DroMel_CAF1
Location 15,802,300 – 15,802,414
Length 114
Max. P 0.903186
window7732

overview

Window 2

Location 15,802,300 – 15,802,414
Length 114
Sequences 3
Columns 114
Reading direction forward
Mean pairwise identity 95.91
Mean single sequence MFE -35.70
Consensus MFE -32.59
Energy contribution -32.37
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -2.41
Structure conservation index 0.91
SVM decision value 1.03
SVM RNA-class probability 0.903186
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15802300 114 + 20766785
CUUUUUUAUUUUUGUCGGCUGGAUACGUGACUAUGUAGUCCGAAGAUGGAACAGAUGCAGUCCAAUUGGUGUCAGACGAACAAGGUGCGUGUCCGGCAUGAUAAAUAUUGCAAU
..........((((((((((((((((((.(((.(((.(((.((.((((((.(.......)))).)))....)).)))..))).)))))))))))))).)))))))......... ( -35.50)
>DroSim_CAF1 8297 114 + 1
CUUUUUUAUUUUUGUCGGCUGGAUACGUGACUAUGUAGUCCGAAGAUGGAACAGAUGCAGUCCAAUUGGUAUCAGACGAACAAGGUGCGUGUCCGGCAUGAUAAAUAUUGCAAU
..........((((((((((((((((((.(((.(((.(((.((.((((((.(.......)))).)))....)).)))..))).)))))))))))))).)))))))......... ( -34.40)
>DroYak_CAF1 8196 114 + 1
CUUUUUUGGUUUUGUCGGUUGGAUACGUGACAAUGUUGUCUGAAGAUGGAACAGAUGCAGUCCAAUUGGUGUCAGACGAACAAGGUGCGUGUCCGGCAUGAUAAAUAUUGCAAU
..........((((((((((((((((((.((..((((((((((.((((((.(.......)))).)))....)))))).))))..))))))))))))).)))))))......... ( -37.20)
>consensus
CUUUUUUAUUUUUGUCGGCUGGAUACGUGACUAUGUAGUCCGAAGAUGGAACAGAUGCAGUCCAAUUGGUGUCAGACGAACAAGGUGCGUGUCCGGCAUGAUAAAUAUUGCAAU
..........((((((((((((((((((.((..(((.(((.((.((((((.(.......)))).)))....)).)))..)))..))))))))))))).)))))))......... (-32.59 = -32.37 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:52 2006