| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,793,596 – 15,793,689 |
| Length | 93 |
| Max. P | 0.608934 |
| Location | 15,793,596 – 15,793,689 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 94.09 |
| Mean single sequence MFE | -23.84 |
| Consensus MFE | -21.39 |
| Energy contribution | -22.02 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608934 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15793596 93 + 20766785 CAGUUUUCCGCCUUCGAAAGUGCAGGCUCCUUGGCUGCGCCUUUUAGCAGCUUUGGUGGCUUCGCUGUUUUCUGUUUAUUCUGAACCAUAAUU (((..(...((.......((((.(((((((..((((((........))))))..)).))))))))).......))..)..))).......... ( -25.54) >DroSec_CAF1 2586 93 + 1 CAGUUUUCCGCCUUCGAAAGUGCAGGCUCCUUUGCUGCGCCUUUUAGCAGCUUUGGUGGCUUUGCUGUUUUCUGCUUAUUCUGAACCAUAAUU ((((...((((((.(....)...)))).((...(((((........)))))...)).))....)))).......................... ( -23.20) >DroSim_CAF1 3546 93 + 1 CAGUUUUCCGCCUUCGAAAGUGCAGGCUCCUUGGCUGCGCCUUUUAGCAGCUUUGGUGGCUUCGCUGUUUUCUGCUUAUUCUGAACCAUAAUU (((..(...((.......((((.(((((((..((((((........))))))..)).))))))))).......))..)..))).......... ( -27.14) >DroYak_CAF1 2572 90 + 1 CAGUUCUCCGCCUUCGAAAGUGCAGGCUCCUUGGCGACGUCUUUUA---GCUUUGGUGGCUUCGCUGUUUUCUGCUUAUUCUGCACCAUAAUU ...................(((((((((((..(((...........---)))..)).)))...((........)).....))))))....... ( -19.50) >consensus CAGUUUUCCGCCUUCGAAAGUGCAGGCUCCUUGGCUGCGCCUUUUAGCAGCUUUGGUGGCUUCGCUGUUUUCUGCUUAUUCUGAACCAUAAUU (((......((.......((((.(((((((..((((((........))))))..)).))))))))).......)).....))).......... (-21.39 = -22.02 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:48 2006